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Chao Xu

TitleProf,Asst
InstitutionUniversity of Oklahoma Health Sciences Center
DepartmentBiostatistics & Epidemiology
Phone405/271-2229
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    Collapse Biography 
    Collapse education and training
    Jiangsu University, ChinaBS2008Management Information System
    University of Shanghai, ChinaMEng2011Systems Engineering
    Tulane University, New Orleans, LAPhD2018Biostatistics

    Collapse Research 
    Collapse research activities and funding
    R21ES032098     (HWANG, JOOYEON)Jun 3, 2020 - May 31, 2022
    NIH
    Interaction of ambient ammonia and endotoxins with airborne and human nasal microbiome diversity in communities near large-scale poultry feeding operations
    Role: Multi-PI

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
    List All   |   Timeline
    1. Xu C, Zhang R, Shen H, Deng HW. Medium-coverage DNA sequencing in the design of the genetic association study. Eur J Hum Genet. 2020 May 26. PMID: 32457519.
      View in: PubMed
    2. Delpirou Nouh C, Samkutty DG, Chandrashekhar S, Santucci JA, Ford L, Xu C, Hollabaugh KM, Bohnstedt BN, Ray B. Management of Aneurysmal Subarachnoid Hemorrhage: Variation in Clinical Practice and Unmet Need for Follow-up among Survivors-A Single-Center Perspective. World Neurosurg. 2020 Jul; 139:e608-e617. PMID: 32339727.
      View in: PubMed
    3. Yu F, Qiu C, Xu C, Tian Q, Zhao LJ, Wu L, Deng HW, Shen H. Mendelian Randomization Identifies CpG Methylation Sites With Mediation Effects for Genetic Influences on BMD in Peripheral Blood Monocytes. Front Genet. 2020; 11:60. PMID: 32180791.
      View in: PubMed
    4. Sidorov E, Bejar C, Xu C, Ray B, Reddivari L, Chainakul J, Vanamala JKP, Sanghera DK. Potential Metabolite Biomarkers for Acute Versus Chronic Stage of Ischemic Stroke: A Pilot Study. J Stroke Cerebrovasc Dis. 2020 Apr; 29(4):104618. PMID: 31973907.
      View in: PubMed
    5. Qiu C, Yu F, Su K, Zhao Q, Zhang L, Xu C, Hu W, Wang Z, Zhao L, Tian Q, Wang Y, Deng H, Shen H. Multi-omics Data Integration for Identifying Osteoporosis Biomarkers and Their Biological Interaction and Causal Mechanisms. iScience. 2020 Feb 21; 23(2):100847. PMID: 32058959.
      View in: PubMed
    6. Dwivedi SKD, Shameer K, Dey A, Mustafi SB, Xiong X, Bhattacharya U, Neizer-Ashun F, Rao G, Wang Y, Ivan C, Yang D, Dudley JT, Xu C, Wren JD, Mukherjee P, Bhattacharya R. KRCC1: A potential therapeutic target in ovarian cancer. FASEB J. 2020 Feb; 34(2):2287-2300. PMID: 31908025.
      View in: PubMed
    7. Zhou Y, Xu C, Zhu W, He H, Zhang L, Tang B, Zeng Y, Tian Q, Deng HW. Long Noncoding RNA Analyses for Osteoporosis Risk in Caucasian Women. Calcif Tissue Int. 2019 08; 105(2):183-192. PMID: 31073748.
      View in: PubMed
    8. Li YM, Peng C, Zhang JG, Zhu W, Xu C, Lin Y, Fu XY, Tian Q, Zhang L, Xiang Y, Sheng V, Deng HW. Genetic risk factors identified in populations of European descent do not improve the prediction of osteoporotic fracture and bone mineral density in Chinese populations. Sci Rep. 2019 04 15; 9(1):6086. PMID: 30988369.
      View in: PubMed
    9. Zhang JG, Xu C, Zhang L, Zhu W, Shen H, Deng HW. Identify gene expression pattern change at transcriptional and post-transcriptional levels. Transcription. 2019 06; 10(3):137-146. PMID: 30696368.
      View in: PubMed
    10. Qiu C, Shen H, Fu X, Xu C, Tian Q, Deng H. Integrative genomic analysis predicts novel functional enhancer-SNPs for bone mineral density. Hum Genet. 2019 Feb; 138(2):167-185. PMID: 30656451.
      View in: PubMed
    11. Chen YC, Xu C, Zhang JG, Zeng CP, Wang XF, Zhou R, Lin X, Ao ZX, Lu JM, Shen J, Deng HW. Multivariate analysis of genomics data to identify potential pleiotropic genes for type 2 diabetes, obesity and dyslipidemia using Meta-CCA and gene-based approach. PLoS One. 2018; 13(8):e0201173. PMID: 30110382.
      View in: PubMed
    12. Xu C, Fang J, Shen H, Wang YP, Deng HW. EPS-LASSO: test for high-dimensional regression under extreme phenotype sampling of continuous traits. Bioinformatics. 2018 06 15; 34(12):1996-2003. PMID: 29385408.
      View in: PubMed
    13. Li Y, Xiang Y, Xu C, Shen H, Deng H. Rare variant association analysis in case-parents studies by allowing for missing parental genotypes. BMC Genet. 2018 01 15; 19(1):7. PMID: 29334894.
      View in: PubMed
    14. Zhou Y, Gao Y, Xu C, Shen H, Tian Q, Deng HW. A novel approach for correction of crosstalk effects in pathway analysis and its application in osteoporosis research. Sci Rep. 2018 01 12; 8(1):668. PMID: 29330445.
      View in: PubMed
    15. Xu C, Zhang JG, Lin D, Zhang L, Shen H, Deng HW. A Systemic Analysis of Transcriptomic and Epigenomic Data To Reveal Regulation Patterns for Complex Disease. G3 (Bethesda). 2017 07 05; 7(7):2271-2279. PMID: 28500050.
      View in: PubMed
    16. Li YM, Xu C, Xiang Y, Peng C, Deng HW. An adaptive strategy for association analysis of common or rare variants using entropy theory. J Hum Genet. 2017 Aug; 62(8):777-781. PMID: 28381878.
      View in: PubMed
    17. Zeng Y, Deng FY, Zhu W, Zhang L, He H, Xu C, Tian Q, Zhang JG, Zhang LS, Hu HG, Deng HW. Mass spectrometry based proteomics profiling of human monocytes. Protein Cell. 2017 02; 8(2):123-133. PMID: 27878450.
      View in: PubMed
    18. Xu C, Wu K, Zhang JG, Shen H, Deng HW. Low-, high-coverage, and two-stage DNA sequencing in the design of the genetic association study. Genet Epidemiol. 2017 04; 41(3):187-197. PMID: 27813156.
      View in: PubMed
    19. Lin D, Zhang J, Li J, Xu C, Deng HW, Wang YP. An integrative imputation method based on multi-omics datasets. BMC Bioinformatics. 2016 Jun 21; 17:247. PMID: 27329642.
      View in: PubMed
    20. Zhang JG, Tan LJ, Xu C, He H, Tian Q, Zhou Y, Qiu C, Chen XD, Deng HW. Integrative Analysis of Transcriptomic and Epigenomic Data to Reveal Regulation Patterns for BMD Variation. PLoS One. 2015; 10(9):e0138524. PMID: 26390436.
      View in: PubMed
    21. Xu C, Zhang J, Wang YP, Deng HW, Li J. Characterization of human chromosomal material exchange with regard to the chromosome translocations using next-generation sequencing data. Genome Biol Evol. 2014 Oct 27; 6(11):3015-24. PMID: 25349267.
      View in: PubMed
    22. Shen H, Li J, Zhang J, Xu C, Jiang Y, Wu Z, Zhao F, Liao L, Chen J, Lin Y, Tian Q, Papasian CJ, Deng HW. Comprehensive characterization of human genome variation by high coverage whole-genome sequencing of forty four Caucasians. PLoS One. 2013; 8(4):e59494. PMID: 23577066.
      View in: PubMed
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