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Last Name

Lee R Krumholz

InstitutionUniversity of Oklahoma, Norman
DepartmentMicrobiology and Plant Biology
Address770 Van Vleet Oval
Norman OK
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Yan Z, He Y, Cai H, Van Nostrand JD, He Z, Zhou J, Krumholz LR, Jiang HL. Interconnection of Key Microbial Functional Genes for Enhanced Benzo[a]pyrene Biodegradation in Sediments by Microbial Electrochemistry. Environ Sci Technol. 2017 Aug 01; 51(15):8519-8529. PMID: 28677976.
      View in: PubMed
    2. Wang L, Bradstock P, Li C, McInerney MJ, Krumholz LR. The role of Rnf in ion gradient formation in Desulfovibrio alaskensis. PeerJ. 2016; 4:e1919. PMID: 27114876; PMCID: PMC4841214.
    3. Chen M, Li XH, He YH, Song N, Cai HY, Wang C, Li YT, Chu HY, Krumholz LR, Jiang HL. Increasing sulfate concentrations result in higher sulfide production and phosphorous mobilization in a shallow eutrophic freshwater lake. Water Res. 2016 06 01; 96:94-104. PMID: 27023925.
      View in: PubMed
    4. Butler EC, Chen L, Hansel CM, Krumholz LR, Elwood Madden AS, Lan Y. Biological versus mineralogical chromium reduction: potential for reoxidation by manganese oxide. Environ Sci Process Impacts. 2015 Nov; 17(11):1930-40. PMID: 26452013.
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    5. Spain AM, Elshahed MS, Najar FZ, Krumholz LR. Metatranscriptomic analysis of a high-sulfide aquatic spring reveals insights into sulfur cycling and unexpected aerobic metabolism. PeerJ. 2015; 3:e1259. PMID: 26417542; PMCID: PMC4582958.
    6. Yan Z, Jiang H, Cai H, Zhou Y, Krumholz LR. Complex Interactions Between the Macrophyte Acorus Calamus and Microbial Fuel Cells During Pyrene and Benzo[a]Pyrene Degradation in Sediments. Sci Rep. 2015 May 29; 5:10709. PMID: 26023748; PMCID: PMC4448661.
    7. Krumholz LR, Bradstock P, Sheik CS, Diao Y, Gazioglu O, Gorby Y, McInerney MJ. Syntrophic growth of Desulfovibrio alaskensis requires genes for H2 and formate metabolism as well as those for flagellum and biofilm formation. Appl Environ Microbiol. 2015 Apr; 81(7):2339-48. PMID: 25616787; PMCID: PMC4357941.
    8. Cai H, Jiang H, Krumholz LR, Yang Z. Bacterial community composition of size-fractioned aggregates within the phycosphere of cyanobacterial blooms in a eutrophic freshwater lake. PLoS One. 2014; 9(8):e102879. PMID: 25144467; PMCID: PMC4140718.
    9. Chen M, Ye TR, Krumholz LR, Jiang HL. Temperature and cyanobacterial bloom biomass influence phosphorous cycling in eutrophic lake sediments. PLoS One. 2014; 9(3):e93130. PMID: 24682039; PMCID: PMC3969358.
    10. Li X, Zhang H, Ma Y, Liu P, Krumholz LR. Genes required for alleviation of uranium toxicity in sulfate reducing bacterium Desulfovibrio alaskensis G20 [corrected]. Ecotoxicology. 2014 May; 23(4):726-33. PMID: 24510447.
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    11. Krumholz LR, Wang L, Beck DA, Wang T, Hackett M, Mooney B, Juba TR, McInerney MJ, Meyer B, Wall JD, Stahl DA. Membrane protein complex of APS reductase and Qmo is present in Desulfovibrio vulgaris and Desulfovibrio alaskensis. Microbiology. 2013 Oct; 159(Pt 10):2162-8. PMID: 23842468.
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    12. Cai HY, Yan ZS, Wang AJ, Krumholz LR, Jiang HL. Analysis of the attached microbial community on mucilaginous cyanobacterial aggregates in the eutrophic Lake Taihu reveals the importance of Planctomycetes. Microb Ecol. 2013 Jul; 66(1):73-83. PMID: 23571665.
      View in: PubMed
    13. Shah Z, Krumholz L, Aktas DF, Hasan F, Khattak M, Shah AA. Degradation of polyester polyurethane by a newly isolated soil bacterium, Bacillus subtilis strain MZA-75. Biodegradation. 2013 Nov; 24(6):865-77. PMID: 23536219.
      View in: PubMed
    14. Sheik CS, Mitchell TW, Rizvi FZ, Rehman Y, Faisal M, Hasnain S, McInerney MJ, Krumholz LR. Exposure of soil microbial communities to chromium and arsenic alters their diversity and structure. PLoS One. 2012; 7(6):e40059. PMID: 22768219; PMCID: PMC3386950.
    15. Li X, McInerney MJ, Stahl DA, Krumholz LR. Metabolism of H2 by Desulfovibrio alaskensis G20 during syntrophic growth on lactate. Microbiology. 2011 Oct; 157(Pt 10):2912-21. PMID: 21798981.
      View in: PubMed
    16. Sheik CS, Beasley WH, Elshahed MS, Zhou X, Luo Y, Krumholz LR. Effect of warming and drought on grassland microbial communities. ISME J. 2011 Oct; 5(10):1692-700. PMID: 21451582; PMCID: PMC3176507.
    17. Dong Y, Butler EC, Philp RP, Krumholz LR. Impacts of microbial community composition on isotope fractionation during reductive dechlorination of tetrachloroethylene. Biodegradation. 2011 Apr; 22(2):431-44. PMID: 20862525.
      View in: PubMed
    18. Savage KN, Krumholz LR, Gieg LM, Parisi VA, Suflita JM, Allen J, Philp RP, Elshahed MS. Biodegradation of low-molecular-weight alkanes under mesophilic, sulfate-reducing conditions: metabolic intermediates and community patterns. FEMS Microbiol Ecol. 2010 Jun; 72(3):485-95. PMID: 20402777.
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    19. Castañeda-Carrión IN, Sheik CS, Krumholz LR. Desulfovibrio africanus subsp. uniflagellum subsp. nov., a sulfate-reducing bacterium from a uranium-contaminated subsurface aquifer. Int J Syst Evol Microbiol. 2010 Apr; 60(Pt 4):880-6. PMID: 19661495.
      View in: PubMed
    20. Castañeda-Carrión IN, Whiteley M, Krumholz LR. Characterization of pNC1, a small and mobilizable plasmid for use in genetic manipulation of Desulfovibrio africanus. J Microbiol Methods. 2009 Oct; 79(1):23-31. PMID: 19631701.
      View in: PubMed
    21. Youssef N, Sheik CS, Krumholz LR, Najar FZ, Roe BA, Elshahed MS. Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys. Appl Environ Microbiol. 2009 Aug; 75(16):5227-36. PMID: 19561178; PMCID: PMC2725448.
    22. Li X, Krumholz LR. Thioredoxin is involved in U(VI) and Cr(VI) reduction in Desulfovibrio desulfuricans G20. J Bacteriol. 2009 Aug; 191(15):4924-33. PMID: 19482922; PMCID: PMC2715717.
    23. Spain AM, Krumholz LR, Elshahed MS. Abundance, composition, diversity and novelty of soil Proteobacteria. ISME J. 2009 Aug; 3(8):992-1000. PMID: 19404326.
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    24. Michalsen MM, Peacock AD, Smithgal AN, White DC, Spain AM, Sanchez-Rosario Y, Krumholz LR, Kelly SD, Kemner KM, McKinley J, Heald SM, Bogle MA, Watson DB, Istok JD. Treatment of nitric acid-, U(VI)-, and Tc(VII)-contaminated groundwater in intermediate-scale physical models of an in situ biobarrier. Environ Sci Technol. 2009 Mar 15; 43(6):1952-61. PMID: 19368198.
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    25. Li X, Luo Q, Wofford NQ, Keller KL, McInerney MJ, Wall JD, Krumholz LR. A molybdopterin oxidoreductase is involved in H2 oxidation in Desulfovibrio desulfuricans G20. J Bacteriol. 2009 Apr; 191(8):2675-82. PMID: 19233927.
      View in: PubMed
    26. Dong Y, Liang X, Krumholz LR, Philp RP, Butler EC. The relative contributions of abiotic and microbial processes to the transformation of tetrachloroethylene and trichloroethylene in anaerobic microcosms. Environ Sci Technol. 2009 Feb 01; 43(3):690-7. PMID: 19245003.
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    27. Elshahed MS, Youssef NH, Spain AM, Sheik C, Najar FZ, Sukharnikov LO, Roe BA, Davis JP, Schloss PD, Bailey VL, Krumholz LR. Novelty and uniqueness patterns of rare members of the soil biosphere. Appl Environ Microbiol. 2008 Sep; 74(17):5422-8. PMID: 18606799; PMCID: PMC2546616.
    28. Savage KN, Krumholz LR, Oren A, Elshahed MS. Halosarcina pallida gen. nov., sp. nov., a halophilic archaeon from a low-salt, sulfide-rich spring. Int J Syst Evol Microbiol. 2008 Apr; 58(Pt 4):856-60. PMID: 18398182.
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    29. Li X, Krumholz LR. Influence of nitrate on microbial reduction of pertechnetate. Environ Sci Technol. 2008 Mar 15; 42(6):1910-5. PMID: 18409612.
      View in: PubMed
    30. Liang X, Dong Y, Kuder T, Krumholz LR, Philp RP, Butler EC. Distinguishing abiotic and biotic transformation of tetrachloroethylene and trichloroethylene by stable carbon isotope fractionation. Environ Sci Technol. 2007 Oct 15; 41(20):7094-100. PMID: 17993153.
      View in: PubMed
    31. Luo Q, Groh JL, Ballard JD, Krumholz LR. Identification of genes that confer sediment fitness to Desulfovibrio desulfuricans G20. Appl Environ Microbiol. 2007 Oct; 73(19):6305-12. PMID: 17704273; PMCID: PMC2074997.
    32. Michalsen MM, Peacock AD, Spain AM, Smithgal AN, White DC, Sanchez-Rosario Y, Krumholz LR, Istok JD. Changes in microbial community composition and geochemistry during uranium and technetium bioimmobilization. Appl Environ Microbiol. 2007 Sep; 73(18):5885-96. PMID: 17630297; PMCID: PMC2074911.
    33. Luo Q, Hixson KK, Callister SJ, Lipton MS, Morris BE, Krumholz LR. Proteome analysis of Desulfovibrio desulfuricans G20 mutants using the accurate mass and time (AMT) tag approach. J Proteome Res. 2007 Aug; 6(8):3042-53. PMID: 17602684.
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    34. Spain AM, Peacock AD, Istok JD, Elshahed MS, Najar FZ, Roe BA, White DC, Krumholz LR. Identification and isolation of a Castellaniella species important during biostimulation of an acidic nitrate- and uranium-contaminated aquifer. Appl Environ Microbiol. 2007 Aug; 73(15):4892-904. PMID: 17557842; PMCID: PMC1951013.
    35. Elshahed MS, Youssef NH, Luo Q, Najar FZ, Roe BA, Sisk TM, Bühring SI, Hinrichs KU, Krumholz LR. Phylogenetic and metabolic diversity of Planctomycetes from anaerobic, sulfide- and sulfur-rich Zodletone Spring, Oklahoma. Appl Environ Microbiol. 2007 Aug; 73(15):4707-16. PMID: 17545322; PMCID: PMC1951033.
    36. Li X, Krumholz LR. Regulation of arsenate resistance in Desulfovibrio desulfuricans G20 by an arsRBCC operon and an arsC gene. J Bacteriol. 2007 May; 189(10):3705-11. PMID: 17337573; PMCID: PMC1913334.
    37. Savage KN, Krumholz LR, Oren A, Elshahed MS. Haladaptatus paucihalophilus gen. nov., sp. nov., a halophilic archaeon isolated from a low-salt, sulfide-rich spring. Int J Syst Evol Microbiol. 2007 Jan; 57(Pt 1):19-24. PMID: 17220434.
      View in: PubMed
    38. Groh JL, Luo Q, Ballard JD, Krumholz LR. Genes that enhance the ecological fitness of Shewanella oneidensis MR-1 in sediments reveal the value of antibiotic resistance. Appl Environ Microbiol. 2007 Jan; 73(2):492-8. PMID: 17114320; PMCID: PMC1796991.
    39. Wall JD, Krumholz LR. Uranium reduction. Annu Rev Microbiol. 2006; 60:149-66. PMID: 16704344.
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    40. Groh JL, Luo Q, Ballard JD, Krumholz LR. A method adapting microarray technology for signature-tagged mutagenesis of Desulfovibrio desulfuricans G20 and Shewanella oneidensis MR-1 in anaerobic sediment survival experiments. Appl Environ Microbiol. 2005 Nov; 71(11):7064-74. PMID: 16269742; PMCID: PMC1287673.
    41. Senko JM, Dewers TA, Krumholz LR. Effect of oxidation rate and Fe(II) state on microbial nitrate-dependent Fe(III) mineral formation. Appl Environ Microbiol. 2005 Nov; 71(11):7172-7. PMID: 16269756; PMCID: PMC1287677.
    42. Elshahed MS, Najar FZ, Aycock M, Qu C, Roe BA, Krumholz LR. Metagenomic analysis of the microbial community at Zodletone Spring (Oklahoma): insights into the genome of a member of the novel candidate division OD1. Appl Environ Microbiol. 2005 Nov; 71(11):7598-602. PMID: 16269812; PMCID: PMC1287674.
    43. Luo Q, Krumholz LR, Najar FZ, Peacock AD, Roe BA, White DC, Elshahed MS. Diversity of the microeukaryotic community in sulfide-rich Zodletone Spring (Oklahoma). Appl Environ Microbiol. 2005 Oct; 71(10):6175-84. PMID: 16204536; PMCID: PMC1265994.
    44. Senko JM, Mohamed Y, Dewers TA, Krumholz LR. Role for Fe(III) minerals in nitrate-dependent microbial U(IV) oxidation. Environ Sci Technol. 2005 Apr 15; 39(8):2529-36. PMID: 15884345.
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    45. Elshahed MS, Savage KN, Oren A, Gutierrez MC, Ventosa A, Krumholz LR. Haloferax sulfurifontis sp. nov., a halophilic archaeon isolated from a sulfide- and sulfur-rich spring. Int J Syst Evol Microbiol. 2004 Nov; 54(Pt 6):2275-9. PMID: 15545470.
      View in: PubMed
    46. Elshahed MS, Najar FZ, Roe BA, Oren A, Dewers TA, Krumholz LR. Survey of archaeal diversity reveals an abundance of halophilic Archaea in a low-salt, sulfide- and sulfur-rich spring. Appl Environ Microbiol. 2004 Apr; 70(4):2230-9. PMID: 15066817; PMCID: PMC383155.
    47. Chang IS, Groh JL, Ramsey MM, Ballard JD, Krumholz LR. Differential expression of Desulfovibrio vulgaris genes in response to Cu(II) and Hg(II) toxicity. Appl Environ Microbiol. 2004 Mar; 70(3):1847-51. PMID: 15006815; PMCID: PMC368381.
    48. Elias DA, Suflita JM, McInerney MJ, Krumholz LR. Periplasmic cytochrome c3 of Desulfovibrio vulgaris is directly involved in H2-mediated metal but not sulfate reduction. Appl Environ Microbiol. 2004 Jan; 70(1):413-20. PMID: 14711670; PMCID: PMC321309.
    49. Chang IS, Ballard JD, Krumholz LR. Evidence for chimeric sequences formed during random arbitrarily primed PCR. J Microbiol Methods. 2003 Sep; 54(3):427-31. PMID: 12842491.
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    50. Elshahed MS, Senko JM, Najar FZ, Kenton SM, Roe BA, Dewers TA, Spear JR, Krumholz LR. Bacterial diversity and sulfur cycling in a mesophilic sulfide-rich spring. Appl Environ Microbiol. 2003 Sep; 69(9):5609-21. PMID: 12957951; PMCID: PMC194924.
    51. Elias DA, Senko JM, Krumholz LR. A procedure for quantitation of total oxidized uranium for bioremediation studies. J Microbiol Methods. 2003 Jun; 53(3):343-53. PMID: 12689712.
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    52. Steger JL, Vincent C, Ballard JD, Krumholz LR. Desulfovibrio sp. genes involved in the respiration of sulfate during metabolism of hydrogen and lactate. Appl Environ Microbiol. 2002 Apr; 68(4):1932-7. PMID: 11916715; PMCID: PMC123884.
    53. Senko JM, Istok JD, Suflita JM, Krumholz LR. In-situ evidence for uranium immobilization and remobilization. Environ Sci Technol. 2002 Apr 01; 36(7):1491-6. PMID: 11999056.
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    54. Krumholz LR, Harris SH, Tay ST, Suflita JM. Characterization of two subsurface H2-utilizing bacteria, Desulfomicrobium hypogeium sp. nov. and Acetobacterium psammolithicum sp. nov., and their ecological roles. Appl Environ Microbiol. 1999 Jun; 65(6):2300-6. PMID: 10347005; PMCID: PMC91340.
    55. Krumholz LR, Suflita JM. Anaerobic aquifer transformations of 2,4-dinitrophenol under different terminal electron accepting conditions. Anaerobe. 1997 Dec; 3(6):399-403. PMID: 16887615.
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