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Last Name

Susan J Schroeder

TitleAssociate Professor
InstitutionUniversity of Oklahoma, Norman
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    Collapse Biography 
    Collapse education and training
    University of Rochester, Rochester, NYPhD05/2003Biophysical Chemistry

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Schroeder SJ. Challenges and approaches to predicting RNA with multiple functional structures. RNA. 2018 12; 24(12):1615-1624. PMID: 30143552.
      View in: PubMed
    2. Berger KD, Kennedy SD, Schroeder SJ, Znosko BM, Sun H, Mathews DH, Turner DH. Surprising Sequence Effects on GU Closure of Symmetric 2 × 2 Nucleotide RNA Internal Loops. Biochemistry. 2018 04 10; 57(14):2121-2131. PMID: 29570276.
      View in: PubMed
    3. Sloat N, Liu JW, Schroeder SJ. Swellix: a computational tool to explore RNA conformational space. BMC Bioinformatics. 2017 Nov 21; 18(1):504. PMID: 29157200.
      View in: PubMed
    4. Schroeder SJ. Stack Locally and Act Globally: A Few Nucleotides Make All the Difference in Enterovirus 71 IRES Binding hnRNAP A1 and Infectious Phenotypes: Commentary on "HnRNP A1 Alters the Structure of a Conserved Enterovirus IRES Domain to Stimulate Viral Translation". J Mol Biol. 2017 09 15; 429(19):2859-2862. PMID: 28802871.
      View in: PubMed
    5. Phan A, Mailey K, Saeki J, Gu X, Schroeder SJ. Advancing viral RNA structure prediction: measuring the thermodynamics of pyrimidine-rich internal loops. RNA. 2017 05; 23(5):770-781. PMID: 28213527.
      View in: PubMed
    6. Hill AC, Schroeder SJ. Thermodynamic stabilities of three-way junction nanomotifs in prohead RNA. RNA. 2017 04; 23(4):521-529. PMID: 28069889.
      View in: PubMed
    7. Gu X, Park SY, Tonelli M, Cornilescu G, Xia T, Zhong D, Schroeder SJ. NMR Structures and Dynamics in a Prohead RNA Loop that Binds Metal Ions. J Phys Chem Lett. 2016 Oct 06; 7(19):3841-3846. PMID: 27631837.
      View in: PubMed
    8. Hill AC, Bartley LE, Schroeder SJ. Prohead RNA: a noncoding viral RNA of novel structure and function. Wiley Interdiscip Rev RNA. 2016 07; 7(4):428-37. PMID: 26810250.
      View in: PubMed
    9. Guerra I, Schroeder SJ. Crumple: An Efficient Tool to Explore Thoroughly the RNA Folding Landscape. Methods Mol Biol. 2016; 1490:1-14. PMID: 27665589.
      View in: PubMed
    10. Gu X, Mooers BH, Thomas LM, Malone J, Harris S, Schroeder SJ. Structures and Energetics of Four Adjacent G·U Pairs That Stabilize an RNA Helix. J Phys Chem B. 2015 Oct 22; 119(42):13252-61. PMID: 26425937; PMCID: PMC4830635 [Available on 10/22/16].
    11. Stone JW, Bleckley S, Lavelle S, Schroeder SJ. A parallel implementation of the Wuchty algorithm with additional experimental filters to more thoroughly explore RNA conformational space. PLoS One. 2015; 10(2):e0117217. PMID: 25695434.
      View in: PubMed
    12. Schroeder SJ. Probing viral genomic structure: alternative viewpoints and alternative structures for satellite tobacco mosaic virus RNA. Biochemistry. 2014 Nov 04; 53(43):6728-37. PMID: 25320869.
      View in: PubMed
    13. Gu X, Nguyen MT, Overacre A, Seaton S, Schroeder SJ. Effects of salt, polyethylene glycol, and locked nucleic acids on the thermodynamic stabilities of consecutive terminal adenosine mismatches in RNA duplexes. J Phys Chem B. 2013 Apr 04; 117(13):3531-40. PMID: 23480443.
      View in: PubMed
    14. Bleckley S, Stone JW, Schroeder SJ. Crumple: a method for complete enumeration of all possible pseudoknot-free RNA secondary structures. PLoS One. 2012; 7(12):e52414. PMID: 23300665; PMCID: PMC3531468.
    15. Bleckley S, Schroeder SJ. Incorporating global features of RNA motifs in predictions for an ensemble of secondary structures for encapsidated MS2 bacteriophage RNA. RNA. 2012 Jul; 18(7):1309-18. PMID: 22645379; PMCID: PMC3383962.
    16. Wang Y, Shen JK, Schroeder SJ. Nucleotide Dynamics at the A-Site Cleft in the Peptidyltransferase Center of H. marismortui 50S Ribosomal Subunits. J Phys Chem Lett. 2012 Apr 19; 3(8):1007-10. PMID: 26286564.
      View in: PubMed
    17. Schroeder SJ, Stone JW, Bleckley S, Gibbons T, Mathews DM. Ensemble of secondary structures for encapsidated satellite tobacco mosaic virus RNA consistent with chemical probing and crystallography constraints. Biophys J. 2011 Jul 06; 101(1):167-75. PMID: 21723827; PMCID: PMC3127170.
    18. Gu X, Schroeder SJ. Different sequences show similar quaternary interaction stabilities in prohead viral RNA self-assembly. J Biol Chem. 2011 Apr 22; 286(16):14419-26. PMID: 21349846; PMCID: PMC3077641.
    19. Nguyen MT, Schroeder SJ. Consecutive terminal GU pairs stabilize RNA helices. Biochemistry. 2010 Dec 14; 49(49):10574-81. PMID: 21067139.
      View in: PubMed
    20. Harris S, Schroeder SJ. Nuclear magnetic resonance structure of the prohead RNA E-loop hairpin. Biochemistry. 2010 Jul 27; 49(29):5989-97. PMID: 20550192.
      View in: PubMed
    21. Schroeder SJ, Turner DH. Optical melting measurements of nucleic acid thermodynamics. Methods Enzymol. 2009; 468:371-87. PMID: 20946778.
      View in: PubMed
    22. Schroeder SJ. Advances in RNA structure prediction from sequence: new tools for generating hypotheses about viral RNA structure-function relationships. J Virol. 2009 Jul; 83(13):6326-34. PMID: 19369331; PMCID: PMC2698544.
    23. Clanton-Arrowood K, McGurk J, Schroeder SJ. 3' terminal nucleotides determine thermodynamic stabilities of mismatches at the ends of RNA helices. Biochemistry. 2008 Dec 16; 47(50):13418-27. PMID: 19053257.
      View in: PubMed
    24. Blaha G, Gürel G, Schroeder SJ, Moore PB, Steitz TA. Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. J Mol Biol. 2008 Jun 06; 379(3):505-19. PMID: 18455733; PMCID: PMC2442718.
    25. Schroeder SJ, Blaha G, Moore PB. Negamycin binds to the wall of the nascent chain exit tunnel of the 50S ribosomal subunit. Antimicrob Agents Chemother. 2007 Dec; 51(12):4462-5. PMID: 17664317; PMCID: PMC2167971.
    26. Schroeder SJ, Blaha G, Tirado-Rives J, Steitz TA, Moore PB. The structures of antibiotics bound to the E site region of the 50 S ribosomal subunit of Haloarcula marismortui: 13-deoxytedanolide and girodazole. J Mol Biol. 2007 Apr 13; 367(5):1471-9. PMID: 17321546; PMCID: PMC1925262.
    27. Tolbert BS, Kennedy SD, Schroeder SJ, Krugh TR, Turner DH. NMR structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2: probing the structural features that shape the thermodynamic stability of GA pairs. Biochemistry. 2007 Feb 13; 46(6):1511-22. PMID: 17279616; PMCID: PMC4032317.
    28. Mathews DH, Disney MD, Childs JL, Schroeder SJ, Zuker M, Turner DH. Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc Natl Acad Sci U S A. 2004 May 11; 101(19):7287-92. PMID: 15123812; PMCID: PMC409911.
    29. Schroeder SJ, Fountain MA, Kennedy SD, Lukavsky PJ, Puglisi JD, Krugh TR, Turner DH. Thermodynamic stability and structural features of the J4/5 loop in a Pneumocystis carinii group I intron. Biochemistry. 2003 Dec 09; 42(48):14184-96. PMID: 14640686.
      View in: PubMed
    30. Znosko BM, Burkard ME, Schroeder SJ, Krugh TR, Turner DH. Sheared Aanti.Aanti base pairs in a destabilizing 2 x 2 internal loop: the NMR structure of 5'(rGGCAAGCCU)2. Biochemistry. 2002 Dec 17; 41(50):14969-77. PMID: 12475246.
      View in: PubMed
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