Loading...
Header Logo
Keywords
Last Name
Institution

Valentin V Rybenkov

TitleProfessor
InstitutionUniversity of Oklahoma, Norman
DepartmentChemistry/Biochemistry
Phone405/325-1677
vCardDownload vCard

    Collapse Research 
    Collapse research activities and funding
    R21AI141927     (RYBENKOV, VALENTIN V)Jul 1, 2019 - Jun 30, 2021
    NIH/NIAID
    Small molecule inhibitors of bacterial condensins
    Role: Principal Investigator

    R21EY029015     (RYBENKOV, VALENTIN V)Sep 1, 2018 - Aug 31, 2020
    NIH/NEI
    Novel Antimicrobials for Eye Infections
    Role: Principal Investigator

    R01AI136799     (ZGURSKAYA, HELEN I.)Feb 7, 2018 - Jan 31, 2023
    NIH/NIAID
    Optimization of efflux avoidance and inhibition for antibiotic development
    Role: Co-Principal Investigator

    R21AI094124     (RYBENKOV, VALENTIN V)Jul 1, 2011 - Jun 30, 2014
    NIH/NIAID
    Structural Chromosome Maintenance in Pseudomonas aeruginosa
    Role: Principal Investigator

    R21EB009238     (RYBENKOV, VALENTIN V)Jul 6, 2009 - Jun 30, 2012
    NIH/NIBIB
    Nanomanipulation of analysis of lipoplex assembly
    Role: Principal Investigator

    R01GM063786     (RYBENKOV, VALENTIN V)Aug 1, 2001 - Jul 31, 2006
    NIH/NIGMS
    Mechanism of Bacterial SMC Complex MukBEF
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
    List All   |   Timeline
    1. Mansbach RA, Leus IV, Mehla J, Lopez CA, Walker JK, Rybenkov VV, Hengartner NW, Zgurskaya HI, Gnanakaran S. Machine Learning Algorithm Identifies an Antibiotic Vocabulary for Permeating Gram-Negative Bacteria. J Chem Inf Model. 2020 Jun 22; 60(6):2838-2847. PMID: 32453589.
      View in: PubMed
    2. Saha P, Sikdar S, Krishnamoorthy G, Zgurskaya HI, Rybenkov VV. Drug Permeation against Efflux by Two Transporters. ACS Infect Dis. 2020 04 10; 6(4):747-758. PMID: 32039579.
      View in: PubMed
    3. Zgurskaya HI, Rybenkov VV. Permeability barriers of Gram-negative pathogens. Ann N Y Acad Sci. 2020 01; 1459(1):5-18. PMID: 31165502.
      View in: PubMed
    4. Bhowmik BK, Clevenger AL, Zhao H, Rybenkov VV. Segregation but Not Replication of the Pseudomonas aeruginosa Chromosome Terminates at Dif. mBio. 2018 10 23; 9(5). PMID: 30352930.
      View in: PubMed
    5. Zhao H, Petrushenko ZM, Walker JK, Baudry J, Zgurskaya HI, Rybenkov VV. Small Molecule Condensin Inhibitors. ACS Infect Dis. 2018 12 14; 4(12):1737-1745. PMID: 30346684.
      View in: PubMed
    6. Cooper SJ, Krishnamoorthy G, Wolloscheck D, Walker JK, Rybenkov VV, Parks JM, Zgurskaya HI. Molecular Properties That Define the Activities of Antibiotics in Escherichia coli and Pseudomonas aeruginosa. ACS Infect Dis. 2018 08 10; 4(8):1223-1234. PMID: 29756762.
      View in: PubMed
    7. Zgurskaya HI, Rybenkov VV, Krishnamoorthy G, Leus IV. Trans-envelope multidrug efflux pumps of Gram-negative bacteria and their synergism with the outer membrane barrier. Res Microbiol. 2018 Sep - Oct; 169(7-8):351-356. PMID: 29454787.
      View in: PubMed
    8. Krishnamoorthy G, Leus IV, Weeks JW, Wolloscheck D, Rybenkov VV, Zgurskaya HI. Synergy between Active Efflux and Outer Membrane Diffusion Defines Rules of Antibiotic Permeation into Gram-Negative Bacteria. mBio. 2017 10 31; 8(5). PMID: 29089426.
      View in: PubMed
    9. Westfall DA, Krishnamoorthy G, Wolloscheck D, Sarkar R, Zgurskaya HI, Rybenkov VV. Bifurcation kinetics of drug uptake by Gram-negative bacteria. PLoS One. 2017; 12(9):e0184671. PMID: 28926596.
      View in: PubMed
    10. Haynes KM, Abdali N, Jhawar V, Zgurskaya HI, Parks JM, Green AT, Baudry J, Rybenkov VV, Smith JC, Walker JK. Identification and Structure-Activity Relationships of Novel Compounds that Potentiate the Activities of Antibiotics in Escherichia coli. J Med Chem. 2017 07 27; 60(14):6205-6219. PMID: 28650638.
      View in: PubMed
    11. Petrushenko ZM, Rybenkov VV. Biochemical Analysis of Bacterial Condensins. Methods Mol Biol. 2017; 1624:145-159. PMID: 28842882.
      View in: PubMed
    12. Sarkar R, Rybenkov VV. Exploring Condensins with Magnetic Tweezers. Methods Mol Biol. 2017; 1624:161-171. PMID: 28842883.
      View in: PubMed
    13. Krishnamoorthy G, Wolloscheck D, Weeks JW, Croft C, Rybenkov VV, Zgurskaya HI. Breaking the Permeability Barrier of Escherichia coli by Controlled Hyperporination of the Outer Membrane. Antimicrob Agents Chemother. 2016 12; 60(12):7372-7381. PMID: 27697764.
      View in: PubMed
    14. Abdali N, Parks JM, Haynes KM, Chaney JL, Green AT, Wolloscheck D, Walker JK, Rybenkov VV, Baudry J, Smith JC, Zgurskaya HI. Reviving Antibiotics: Efflux Pump Inhibitors That Interact with AcrA, a Membrane Fusion Protein of the AcrAB-TolC Multidrug Efflux Pump. ACS Infect Dis. 2017 01 13; 3(1):89-98. PMID: 27768847.
      View in: PubMed
    15. Zhao H, Clevenger AL, Ritchey JW, Zgurskaya HI, Rybenkov VV. Pseudomonas aeruginosa Condensins Support Opposite Differentiation States. J Bacteriol. 2016 11 01; 198(21):2936-2944. PMID: 27528506.
      View in: PubMed
    16. Rybenkov VV. When Maxwellian demon meets action at a distance: Comment on "Disentangling DNA molecules" by Alexander Vologodskii. Phys Life Rev. 2016 09; 18:150-153. PMID: 27372001.
      View in: PubMed
    17. Petrushenko ZM, Zhao H, Zgurskaya HI, Rybenkov VV. Novobiocin Susceptibility of MukBEF-Deficient Escherichia coli Is Combinatorial with Efflux and Resides in DNA Topoisomerases. Antimicrob Agents Chemother. 2016 05; 60(5):2949-53. PMID: 26926630.
      View in: PubMed
    18. Rybenkov VV, Herrera V, Petrushenko ZM, Zhao H. MukBEF, a chromosomal organizer. J Mol Microbiol Biotechnol. 2014; 24(5-6):371-83. PMID: 25732339.
      View in: PubMed
    19. Rybenkov VV. Maintenance of chromosome structure in Pseudomonas aeruginosa. FEMS Microbiol Lett. 2014 Jul; 356(2):154-65. PMID: 24863732.
      View in: PubMed
    20. Edwards AL, Sangurdekar DP, Jeong KS, Khodursky AB, Rybenkov VV. Transient growth arrest in Escherichia coli induced by chromosome condensation. PLoS One. 2013; 8(12):e84027. PMID: 24376785.
      View in: PubMed
    21. She W, Mordukhova E, Zhao H, Petrushenko ZM, Rybenkov VV. Mutational analysis of MukE reveals its role in focal subcellular localization of MukBEF. Mol Microbiol. 2013 Feb; 87(3):539-52. PMID: 23171168.
      View in: PubMed
    22. Sun Z, Tikhonova EB, Zgurskaya HI, Rybenkov VV. Parallel lipoplex folding pathways revealed using magnetic tweezers. Biomacromolecules. 2012 Oct 08; 13(10):3395-400. PMID: 22988939.
      View in: PubMed
    23. Petrushenko ZM, She W, Rybenkov VV. A new family of bacterial condensins. Mol Microbiol. 2011 Aug; 81(4):881-96. PMID: 21752107.
      View in: PubMed
    24. Petrushenko ZM, Cui Y, She W, Rybenkov VV. Mechanics of DNA bridging by bacterial condensin MukBEF in vitro and in singulo. EMBO J. 2010 Mar 17; 29(6):1126-35. PMID: 20075860.
      View in: PubMed
    25. Vologodskii A, Rybenkov VV. Simulation of DNA catenanes. Phys Chem Chem Phys. 2009 Dec 07; 11(45):10543-52. PMID: 20145800.
      View in: PubMed
    26. Tikhonova EB, Dastidar V, Rybenkov VV, Zgurskaya HI. Kinetic control of TolC recruitment by multidrug efflux complexes. Proc Natl Acad Sci U S A. 2009 Sep 22; 106(38):16416-21. PMID: 19805313.
      View in: PubMed
    27. Rybenkov VV. Towards the architecture of the chromosomal architects. Nat Struct Mol Biol. 2009 Feb; 16(2):104-5. PMID: 19190662.
      View in: PubMed
    28. Cui Y, Petrushenko ZM, Rybenkov VV. MukB acts as a macromolecular clamp in DNA condensation. Nat Struct Mol Biol. 2008 Apr; 15(4):411-8. PMID: 18376412.
      View in: PubMed
    29. She W, Wang Q, Mordukhova EA, Rybenkov VV. MukEF Is required for stable association of MukB with the chromosome. J Bacteriol. 2007 Oct; 189(19):7062-8. PMID: 17644586.
      View in: PubMed
    30. Petrushenko ZM, Lai CH, Rybenkov VV. Antagonistic interactions of kleisins and DNA with bacterial Condensin MukB. J Biol Chem. 2006 Nov 10; 281(45):34208-17. PMID: 16982609.
      View in: PubMed
    31. Wang Q, Mordukhova EA, Edwards AL, Rybenkov VV. Chromosome condensation in the absence of the non-SMC subunits of MukBEF. J Bacteriol. 2006 Jun; 188(12):4431-41. PMID: 16740950.
      View in: PubMed
    32. Petrushenko ZM, Lai CH, Rai R, Rybenkov VV. DNA reshaping by MukB. Right-handed knotting, left-handed supercoiling. J Biol Chem. 2006 Feb 24; 281(8):4606-15. PMID: 16368697.
      View in: PubMed
    Rybenkov's Networks
    Click the "See All" links for more information and interactive visualizations!
    Concepts Expand Description
    _
    Co-Authors Expand Description
    _
    Similar People Expand Description
    _
    Same Department Expand Description