Header Logo
Last Name

Cecil M Lewis

TitleAssociate Professor
InstitutionUniversity of Oklahoma, Norman
vCardDownload vCard

    Collapse Biography 
    Collapse education and training
    University of New MexicoMA2001Anthropology
    University of New MexicoPhD2005Anthropology
    University of Michigan Medical SchoolPostdoc2007Human Genetics

    Collapse Research 
    Collapse research activities and funding
    RM1HG009042     (SPICER, PAUL G)May 16, 2016 - Apr 30, 2020
    Center on American Indian and Alaska Native Genomic Research
    Role: Co-Principal Investigator

    R01GM089886     (LEWIS, CECIL M)Jul 1, 2011 - Jun 30, 2020
    Microbial Ecologies of Indigenous Communities
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
    List All   |   Timeline
    1. Ziesemer KA, Ramos-Madrigal J, Mann AE, Brandt BW, Sankaranarayanan K, Ozga AT, Hoogland M, Hofman CA, Salazar-García DC, Frohlich B, Milner GR, Stone AC, Aldenderfer M, Lewis CM, Hofman CL, Warinner C, Schroeder H. The efficacy of whole human genome capture on ancient dental calculus and dentin. Am J Phys Anthropol. 2019 Mar; 168(3):496-509. PMID: 30586168.
      View in: PubMed
    2. Mann AE, Sabin S, Ziesemer K, Vågene ÅJ, Schroeder H, Ozga AT, Sankaranarayanan K, Hofman CA, Fellows Yates JA, Salazar-García DC, Frohlich B, Aldenderfer M, Hoogland M, Read C, Milner GR, Stone AC, Lewis CM, Krause J, Hofman C, Bos KI, Warinner C. Differential preservation of endogenous human and microbial DNA in dental calculus and dentin. Sci Rep. 2018 Jun 29; 8(1):9822. PMID: 29959351.
      View in: PubMed
    3. Velsko IM, Overmyer KA, Speller C, Klaus L, Collins MJ, Loe L, Frantz LAF, Sankaranarayanan K, Lewis CM, Martinez JBR, Chaves E, Coon JJ, Larson G, Warinner C. The dental calculus metabolome in modern and historic samples. Metabolomics. 2017; 13(11):134. PMID: 29046620.
      View in: PubMed
    4. Schnorr SL, Sankaranarayanan K, Lewis CM, Warinner C. Insights into human evolution from ancient and contemporary microbiome studies. Curr Opin Genet Dev. 2016 Dec; 41:14-26. PMID: 27507098.
      View in: PubMed
    5. Ozga AT, Sankaranarayanan K, Tito RY, Obregon-Tito AJ, Foster MW, Tallbull G, Spicer P, Warinner CG, Lewis CM. Oral microbiome diversity among Cheyenne and Arapaho individuals from Oklahoma. Am J Phys Anthropol. 2016 10; 161(2):321-7. PMID: 27357925.
      View in: PubMed
    6. Jeong C, Ozga AT, Witonsky DB, Malmström H, Edlund H, Hofman CA, Hagan RW, Jakobsson M, Lewis CM, Aldenderfer MS, Di Rienzo A, Warinner C. Long-term genetic stability and a high-altitude East Asian origin for the peoples of the high valleys of the Himalayan arc. Proc Natl Acad Sci U S A. 2016 07 05; 113(27):7485-90. PMID: 27325755; PMCID: PMC4941446.
    7. Ziesemer KA, Mann AE, Sankaranarayanan K, Schroeder H, Ozga AT, Brandt BW, Zaura E, Waters-Rist A, Hoogland M, Salazar-García DC, Aldenderfer M, Speller C, Hendy J, Weston DA, MacDonald SJ, Thomas GH, Collins MJ, Lewis CM, Hofman C, Warinner C. Corrigendum: Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification. Sci Rep. 2016 06 02; 6:27163. PMID: 27254246.
      View in: PubMed
    8. Ozga AT, Nieves-Colón MA, Honap TP, Sankaranarayanan K, Hofman CA, Milner GR, Lewis CM, Stone AC, Warinner C. Successful enrichment and recovery of whole mitochondrial genomes from ancient human dental calculus. Am J Phys Anthropol. 2016 06; 160(2):220-8. PMID: 26989998.
      View in: PubMed
    9. Patel NB, Tito RY, Obregón-Tito AJ, O'Neal L, Trujillo-Villaroel O, Marin-Reyes L, Troncoso-Corzo L, Guija-Poma E, Lewis CM, Lawson PA. Peptoniphilus catoniae sp. nov., isolated from a human faecal sample from a traditional Peruvian coastal community. Int J Syst Evol Microbiol. 2016 May; 66(5):2019-24. PMID: 26907921; PMCID: PMC4854118 [Available on 05/01/17].
    10. Sankaranarayanan K, Ozga AT, Warinner C, Tito RY, Obregon-Tito AJ, Xu J, Gaffney PM, Jervis LL, Cox D, Stephens L, Foster M, Tallbull G, Spicer P, Lewis CM. Gut Microbiome Diversity among Cheyenne and Arapaho Individuals from Western Oklahoma. Curr Biol. 2015 Dec 21; 25(24):3161-9. PMID: 26671671; PMCID: PMC4703035 [Available on 12/21/16].
    11. Ziesemer KA, Mann AE, Sankaranarayanan K, Schroeder H, Ozga AT, Brandt BW, Zaura E, Waters-Rist A, Hoogland M, Salazar-García DC, Aldenderfer M, Speller C, Hendy J, Weston DA, MacDonald SJ, Thomas GH, Collins MJ, Lewis CM, Hofman C, Warinner C. Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification. Sci Rep. 2015 11 13; 5:16498. PMID: 26563586.
      View in: PubMed
    12. O'Neal L, Obregón-Tito AJ, Tito RY, Ozga AT, Polo SI, Lewis CM, Lawson PA. Clostridium amazonense sp. nov. an obliqately anaerobic bacterium isolated from a remote Amazonian community in Peru. Anaerobe. 2015 Oct; 35(Pt B):33-7. PMID: 26123611; PMCID: PMC4600439 [Available on 10/01/16].
    13. Ozga AT, Tito RY, Kemp BM, Matternes H, Obregon-Tito A, Neal L, Lewis CM. Origins of an Unmarked Georgia Cemetery Using Ancient DNA Analysis. Hum Biol. 2015 Apr; 87(2):109-21. PMID: 26829294.
      View in: PubMed
    14. Obregon-Tito AJ, Tito RY, Metcalf J, Sankaranarayanan K, Clemente JC, Ursell LK, Zech Xu Z, Van Treuren W, Knight R, Gaffney PM, Spicer P, Lawson P, Marin-Reyes L, Trujillo-Villarroel O, Foster M, Guija-Poma E, Troncoso-Corzo L, Warinner C, Ozga AT, Lewis CM. Subsistence strategies in traditional societies distinguish gut microbiomes. Nat Commun. 2015 Mar 25; 6:6505. PMID: 25807110; PMCID: PMC4386023.
    15. Warinner C, Speller C, Collins MJ, Lewis CM. Ancient human microbiomes. J Hum Evol. 2015 Feb; 79:125-36. PMID: 25559298.
      View in: PubMed
    16. Patel NB, Tito RY, Obregón-Tito AJ, O'Neal L, Trujillo-Villaroel O, Marin-Reyes L, Troncoso-Corzo L, Guija-Poma E, Hamada M, Uchino Y, Lewis CM, Lawson PA. Ezakiella peruensis gen. nov., sp. nov. isolated from human fecal sample from a coastal traditional community in Peru. Anaerobe. 2015 Apr; 32:43-48. PMID: 25481562.
      View in: PubMed
    17. Warinner C, Rodrigues JF, Vyas R, Trachsel C, Shved N, Grossmann J, Radini A, Hancock Y, Tito RY, Fiddyment S, Speller C, Hendy J, Charlton S, Luder HU, Salazar-García DC, Eppler E, Seiler R, Hansen LH, Castruita JA, Barkow-Oesterreicher S, Teoh KY, Kelstrup CD, Olsen JV, Nanni P, Kawai T, Willerslev E, von Mering C, Lewis CM, Collins MJ, Gilbert MT, Rühli F, Cappellini E. Pathogens and host immunity in the ancient human oral cavity. Nat Genet. 2014 Apr; 46(4):336-44. PMID: 24562188.
      View in: PubMed
    18. Cabana GS, Lewis CM, Tito RY, Covey RA, Cáceres AM, Cruz AF, Durand D, Housman G, Hulsey BI, Iannacone GC, López PW, Martínez R, Medina Á, Dávila OO, Pinto KP, Santillán SI, Domínguez PR, Rubel M, Smith HF, Smith SE, Massa VR, Lizárraga B, Stone AC. Population genetic structure of traditional populations in the Peruvian Central Andes and implications for South American population history. Hum Biol. 2014; 86(3):147-65. PMID: 25836744.
      View in: PubMed
    19. Cleeland LM, Reichard MV, Tito RY, Reinhard KJ, Lewis CM. Clarifying Prehistoric Parasitism from a Complementary Morphological and Molecular Approach. J Archaeol Sci. 2013 Jul 01; 40(7):3060-3066. PMID: 23645967.
      View in: PubMed
    20. Tito RY, Knights D, Metcalf J, Obregon-Tito AJ, Cleeland L, Najar F, Roe B, Reinhard K, Sobolik K, Belknap S, Foster M, Spicer P, Knight R, Lewis CM. Insights from characterizing extinct human gut microbiomes. PLoS One. 2012; 7(12):e51146. PMID: 23251439; PMCID: PMC3521025.
    21. Schlebusch CM, Lewis CM, Vahter M, Engström K, Tito RY, Obregón-Tito AJ, Huerta D, Polo SI, Medina ÁC, Brutsaert TD, Concha G, Jakobsson M, Broberg K. Possible positive selection for an arsenic-protective haplotype in humans. Environ Health Perspect. 2013 Jan; 121(1):53-8. PMID: 23070617.
      View in: PubMed
    22. Lewis CM, Obregón-Tito A, Tito RY, Foster MW, Spicer PG. The Human Microbiome Project: lessons from human genomics. Trends Microbiol. 2012 Jan; 20(1):1-4. PMID: 22112388; PMCID: PMC3709440.
    23. Tito RY, Belknap SL, Sobolik KD, Ingraham RC, Cleeland LM, Lewis CM. Brief communication: DNA from early Holocene American dog. Am J Phys Anthropol. 2011 Aug; 145(4):653-7. PMID: 21541929; PMCID: PMC3133791.
    24. Lewis CM. Hierarchical modeling of genome-wide Short Tandem Repeat (STR) markers infers native American prehistory. Am J Phys Anthropol. 2010 Feb; 141(2):281-9. PMID: 19672848.
      View in: PubMed
    25. Tito RY, Macmil S, Wiley G, Najar F, Cleeland L, Qu C, Wang P, Romagne F, Leonard S, Ruiz AJ, Reinhard K, Roe BA, Lewis CM. Phylotyping and functional analysis of two ancient human microbiomes. PLoS One. 2008; 3(11):e3703. PMID: 19002248; PMCID: PMC2577302.
    26. Verrelli BC, Lewis CM, Stone AC, Perry GH. Different selective pressures shape the molecular evolution of color vision in chimpanzee and human populations. Mol Biol Evol. 2008 Dec; 25(12):2735-43. PMID: 18832077; PMCID: PMC2721556.
    27. Lewis CM, Long JC. Native South American genetic structure and prehistory inferred from hierarchical modeling of mtDNA. Mol Biol Evol. 2008 Mar; 25(3):478-86. PMID: 18222947.
      View in: PubMed
    28. Wang S, Lewis CM, Jakobsson M, Ramachandran S, Ray N, Bedoya G, Rojas W, Parra MV, Molina JA, Gallo C, Mazzotti G, Poletti G, Hill K, Hurtado AM, Labuda D, Klitz W, Barrantes R, Bortolini MC, Salzano FM, Petzl-Erler ML, Tsuneto LT, Llop E, Rothhammer F, Excoffier L, Feldman MW, Rosenberg NA, Ruiz-Linares A. Genetic variation and population structure in native Americans. PLoS Genet. 2007 Nov; 3(11):e185. PMID: 18039031.
      View in: PubMed
    29. Lewis CM, Lizárraga B, Tito RY, López PW, Iannacone GC, Medina A, Martínez R, Polo SI, De La Cruz AF, Cáceres AM, Stone AC. Mitochondrial DNA and the peopling of South America. Hum Biol. 2007 Apr; 79(2):159-78. PMID: 18027812.
      View in: PubMed
    30. Lewis CM, Tito RY, Lizárraga B, Stone AC. Land, language, and loci: mtDNA in Native Americans and the genetic history of Peru. Am J Phys Anthropol. 2005 Jul; 127(3):351-60. PMID: 15584069.
      View in: PubMed
    31. Monsalve MV, Stone AC, Lewis CM, Rempel A, Richards M, Straathof D, Devine DV. Brief communication: molecular analysis of the Kwäday Dän Ts'finchi ancient remains found in a glacier in Canada. Am J Phys Anthropol. 2002 Nov; 119(3):288-91. PMID: 12365041.
      View in: PubMed
    Lewis's Networks
    Click the "See All" links for more information and interactive visualizations!
    Concepts Expand Description
    Co-Authors Expand Description
    Similar People Expand Description
    Same Department Expand Description