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David W Dyer

InstitutionUniversity of Oklahoma Health Sciences Center
DepartmentMicrobiology & Immunology
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    Collapse Research 
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    S10RR019334     (DYER, DAVID W.)Mar 1, 2004 - Feb 28, 2005
    Capillary DNA Sequencers for the OUHSC Core Facility
    Role: Principal Investigator

    P20RR015564     (IANDOLO, JOHN J.)Sep 15, 2000 - Feb 28, 2011
    Functional Genome/Proteomic Analysis of Pathogen-Host Interactions
    Role: Co-Principal Investigator

    R01DE012231     (DYER, DAVID W.)Apr 1, 1997 - Mar 31, 2001
    Role: Principal Investigator

    G08LM006447     (DYER, DAVID W.)Sep 30, 1996 - Sep 29, 1997
    Role: Principal Investigator

    R01AI038399     (DYER, DAVID W.)Jun 1, 1995 - May 31, 2000
    Role: Principal Investigator

    F32DK009040     (DYER, DAVID L)Sep 10, 1994
    Role: Principal Investigator

    R01AI023357     (DYER, DAVID W.)Apr 1, 1986 - Dec 31, 1996
    Role: Principal Investigator

    R23AI023357     (DYER, DAVID W.)Apr 1, 1986 - Nov 30, 1989
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Singh G, Ismail AM, Lee JY, Ramke M, Lee JS, Dyer DW, Seto D, Rajaiya J, Chodosh J. Divergent Evolution of E1A CR3 in Human Adenovirus Species D. Viruses. 2019 Feb 08; 11(2). PMID: 30744049.
      View in: PubMed
    2. Scott EJ, Luke-Marshall NR, Campagnari AA, Dyer DW. Draft Genome Sequence of Pediatric Otitis Media Isolate Streptococcus pneumoniae Strain EF3030, Which Forms In Vitro Biofilms That Closely Mimic In Vivo Biofilms. Microbiol Resour Announc. 2019 Jan; 8(2). PMID: 30643873.
      View in: PubMed
    3. Ismail AM, Cui T, Dommaraju K, Singh G, Dehghan S, Seto J, Shrivastava S, Fedorova NB, Gupta N, Stockwell TB, Halpin R, Madupu R, Heim A, Kajon AE, Romanowski EG, Kowalski RP, Malathi J, Therese KL, Madhavan HN, Zhang Q, Ferreyra LJ, Jones MS, Rajaiya J, Dyer DW, Chodosh J, Seto D. Author Correction: Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens. Emerg Microbes Infect. 2018 Dec 08; 7(1):208. PMID: 30532034.
      View in: PubMed
    4. Ismail AM, Lee JS, Lee JY, Singh G, Dyer DW, Seto D, Chodosh J, Rajaiya J. Corrigendum: Adenoviromics: Mining the Human Adenovirus Species D Genome. Front Microbiol. 2018; 9:3005. PMID: 30555456.
      View in: PubMed
    5. Lee JY, Lee JS, Materne EC, Rajala R, Ismail AM, Seto D, Dyer DW, Rajaiya J, Chodosh J. Bacterial RecA Protein Promotes Adenoviral Recombination during In Vitro Infection. mSphere. 2018 06 27; 3(3). PMID: 29925671.
      View in: PubMed
    6. Ismail AM, Cui T, Dommaraju K, Singh G, Dehghan S, Seto J, Shrivastava S, Fedorova NB, Gupta N, Stockwell TB, Halpin R, Madupu R, Heim A, Kajon AE, Romanowski EG, Kowalski RP, Malathi J, Therese KL, Madhavan HN, Zhang Q, Ferreyra LJ, Jones MS, Rajaiya J, Dyer DW, Chodosh J, Seto D. Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens. Emerg Microbes Infect. 2018 Feb 07; 7(1):10. PMID: 29410402.
      View in: PubMed
    7. Cole BK, Scott E, Ilikj M, Bard D, Akins DR, Dyer DW, Chavez-Bueno S. Route of infection alters virulence of neonatal septicemia Escherichia coli clinical isolates. PLoS One. 2017; 12(12):e0189032. PMID: 29236742.
      View in: PubMed
    8. Jackson LA, Day M, Allen J, Scott E, Dyer DW. Iron-regulated small RNA expression as Neisseria gonorrhoeae FA 1090 transitions into stationary phase growth. BMC Genomics. 2017 04 21; 18(1):317. PMID: 28431495.
      View in: PubMed
    9. Ramke M, Lee JY, Dyer DW, Seto D, Rajaiya J, Chodosh J. The 5'UTR in human adenoviruses: leader diversity in late gene expression. Sci Rep. 2017 04 04; 7(1):618. PMID: 28377580.
      View in: PubMed
    10. Ismail AM, Lee JS, Dyer DW, Seto D, Rajaiya J, Chodosh J. Selection Pressure in the Human Adenovirus Fiber Knob Drives Cell Specificity in Epidemic Keratoconjunctivitis. J Virol. 2016 Nov 01; 90(21):9598-9607. PMID: 27512073.
      View in: PubMed
    11. Kenedy MR, Scott EJ, Shrestha B, Anand A, Iqbal H, Radolf JD, Dyer DW, Akins DR. Consensus computational network analysis for identifying candidate outer membrane proteins from Borrelia spirochetes. BMC Microbiol. 2016 07 11; 16(1):141. PMID: 27400788; PMCID: PMC4939628.
    12. Singh G, Zhou X, Lee JY, Yousuf MA, Ramke M, Ismail AM, Lee JS, Robinson CM, Seto D, Dyer DW, Jones MS, Rajaiya J, Chodosh J. Recombination of the epsilon determinant and corneal tropism: Human adenovirus species D types 15, 29, 56, and 69. Virology. 2015 Nov; 485:452-9. PMID: 26343864; PMCID: PMC4619159 [Available on 11/01/16].
    13. Day MW, Jackson LA, Akins DR, Dyer DW, Chavez-Bueno S. Whole-Genome Sequences of the Archetypal K1 Escherichia coli Neonatal Isolate RS218 and Contemporary Neonatal Bacteremia Clinical Isolates SCB11, SCB12, and SCB15. Genome Announc. 2015 Feb 26; 3(1). PMID: 25720688; PMCID: PMC4342429.
    14. Biron B, Beck K, Dyer D, Mattix M, Twenhafel N, Nalca A. Efficacy of ETI-204 monoclonal antibody as an adjunct therapy in a New Zealand white rabbit partial survival model for inhalational anthrax. Antimicrob Agents Chemother. 2015 Apr; 59(4):2206-14. PMID: 25645849; PMCID: PMC4356799.
    15. Toby IT, Widmer J, Dyer DW. Divergence of protein-coding capacity and regulation in the Bacillus cereus sensu lato group. BMC Bioinformatics. 2014; 15 Suppl 11:S8. PMID: 25350501.
      View in: PubMed
    16. Day M, Ibrahim M, Dyer D, Bulla L. Genome Sequence of Bacillus thuringiensis subsp. kurstaki Strain HD-1. Genome Announc. 2014 Jul 17; 2(4). PMID: 25035322.
      View in: PubMed
    17. Chavez-Bueno S, Day MW, Toby IT, Akins DR, Dyer DW. Genome Sequence of SCB34, a Sequence Type 131 Multidrug-Resistant Escherichia coli Isolate Causing Neonatal Early-Onset Sepsis. Genome Announc. 2014 Jun 12; 2(3). PMID: 24926049; PMCID: PMC4056292.
    18. Dehghan S, Seto J, Jones MS, Dyer DW, Chodosh J, Seto D. Simian adenovirus type 35 has a recombinant genome comprising human and simian adenovirus sequences, which predicts its potential emergence as a human respiratory pathogen. Virology. 2013 Dec; 447(1-2):265-73. PMID: 24210123; PMCID: PMC3904862.
    19. Seto D, Jones MS, Dyer DW, Chodosh J. Characterizing, typing, and naming human adenovirus type 55 in the era of whole genome data. J Clin Virol. 2013 Dec; 58(4):741-2. PMID: 24161575.
      View in: PubMed
    20. Jackson LA, Pan JC, Day MW, Dyer DW. Control of RNA stability by NrrF, an iron-regulated small RNA in Neisseria gonorrhoeae. J Bacteriol. 2013 Nov; 195(22):5166-73. PMID: 24039262; PMCID: PMC3811587.
    21. Singh G, Robinson CM, Dehghan S, Jones MS, Dyer DW, Seto D, Chodosh J. Homologous recombination in E3 genes of human adenovirus species D. J Virol. 2013 Nov; 87(22):12481-8. PMID: 24027303; PMCID: PMC3807923.
    22. Dehghan S, Seto J, Liu EB, Walsh MP, Dyer DW, Chodosh J, Seto D. Computational analysis of four human adenovirus type 4 genomes reveals molecular evolution through two interspecies recombination events. Virology. 2013 Sep 01; 443(2):197-207. PMID: 23763770; PMCID: PMC3779658.
    23. Robinson CM, Zhou X, Rajaiya J, Yousuf MA, Singh G, DeSerres JJ, Walsh MP, Wong S, Seto D, Dyer DW, Chodosh J, Jones MS. Predicting the next eye pathogen: analysis of a novel adenovirus. MBio. 2013 Apr 09; 4(2):e00595-12. PMID: 23572555; PMCID: PMC3622935.
    24. Robinson CM, Singh G, Lee JY, Dehghan S, Rajaiya J, Liu EB, Yousuf MA, Betensky RA, Jones MS, Dyer DW, Seto D, Chodosh J. Molecular evolution of human adenoviruses. Sci Rep. 2013; 3:1812. PMID: 23657240; PMCID: PMC3648800.
    25. Scott E, Dyer DW. Divergence of the SigB regulon and pathogenesis of the Bacillus cereus sensu lato group. BMC Genomics. 2012 Oct 22; 13:564. PMID: 23088190; PMCID: PMC3485630.
    26. Zhou X, Robinson CM, Rajaiya J, Dehghan S, Seto D, Jones MS, Dyer DW, Chodosh J. Analysis of human adenovirus type 19 associated with epidemic keratoconjunctivitis and its reclassification as adenovirus type 64. Invest Ophthalmol Vis Sci. 2012 May 14; 53(6):2804-11. PMID: 22467570; PMCID: PMC3367469.
    27. Tekedar HC, Karsi A, Gillaspy AF, Dyer DW, Benton NR, Zaitshik J, Vamenta S, Banes MM, G├╝lsoy N, Aboko-Cole M, Waldbieser GC, Lawrence ML. Genome sequence of the fish pathogen Flavobacterium columnare ATCC 49512. J Bacteriol. 2012 May; 194(10):2763-4. PMID: 22535941; PMCID: PMC3347163.
    28. Liu EB, Wadford DA, Seto J, Vu M, Hudson NR, Thrasher L, Torres S, Dyer DW, Chodosh J, Seto D, Jones MS. Computational and serologic analysis of novel and known viruses in species human adenovirus D in which serology and genomics do not correlate. PLoS One. 2012; 7(3):e33212. PMID: 22427992; PMCID: PMC3302849.
    29. Singh G, Robinson CM, Dehghan S, Schmidt T, Seto D, Jones MS, Dyer DW, Chodosh J. Overreliance on the hexon gene, leading to misclassification of human adenoviruses. J Virol. 2012 Apr; 86(8):4693-5. PMID: 22301156; PMCID: PMC3318657.
    30. Mercante AD, Jackson L, Johnson PJ, Stringer VA, Dyer DW, Shafer WM. MpeR regulates the mtr efflux locus in Neisseria gonorrhoeae and modulates antimicrobial resistance by an iron-responsive mechanism. Antimicrob Agents Chemother. 2012 Mar; 56(3):1491-501. PMID: 22214775; PMCID: PMC3294918.
    31. Dehghan S, Liu EB, Seto J, Torres SF, Hudson NR, Kajon AE, Metzgar D, Dyer DW, Chodosh J, Jones MS, Seto D. Five genome sequences of subspecies B1 human adenoviruses associated with acute respiratory disease. J Virol. 2012 Jan; 86(1):635-6. PMID: 22158846; PMCID: PMC3255920.
    32. Jackson LA, Dyer DW. Protocol for gene expression profiling using DNA microarrays in Neisseria gonorrhoeae. Methods Mol Biol. 2012; 903:343-57. PMID: 22782831; PMCID: PMC4890601.
    33. Siddaramappa S, Challacombe JF, Duncan AJ, Gillaspy AF, Carson M, Gipson J, Orvis J, Zaitshik J, Barnes G, Bruce D, Chertkov O, Detter JC, Han CS, Tapia R, Thompson LS, Dyer DW, Inzana TJ. Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses. BMC Genomics. 2011 Nov 23; 12:570. PMID: 22111657.
      View in: PubMed
    34. Dehghan S, Seto J, Hudson NR, Robinson CM, Jones MS, Dyer DW, Chodosh J, Seto D. Complete genome sequence of human adenovirus prototype 17. J Virol. 2011 Nov; 85(21):11540-1. PMID: 21980031; PMCID: PMC3194981.
    35. Mullins MA, Register KB, Bayles DO, Dyer DW, Kuehn JS, Phillips GJ. Genome sequence of Haemophilus parasuis strain 29755. Stand Genomic Sci. 2011 Oct 15; 5(1):61-8. PMID: 22180811; PMCID: PMC3236040.
    36. Liu EB, Ferreyra L, Fischer SL, Pavan JV, Nates SV, Hudson NR, Tirado D, Dyer DW, Chodosh J, Seto D, Jones MS. Genetic analysis of a novel human adenovirus with a serologically unique hexon and a recombinant fiber gene. PLoS One. 2011; 6(9):e24491. PMID: 21915339; PMCID: PMC3168504.
    37. Schmidt TR, Scott EJ, Dyer DW. Whole-genome phylogenies of the family Bacillaceae and expansion of the sigma factor gene family in the Bacillus cereus species-group. BMC Genomics. 2011 Aug 24; 12:430. PMID: 21864360; PMCID: PMC3171730.
    38. Walsh MP, Seto J, Liu EB, Dehghan S, Hudson NR, Lukashev AN, Ivanova O, Chodosh J, Dyer DW, Jones MS, Seto D. Computational analysis of two species C human adenoviruses provides evidence of a novel virus. J Clin Microbiol. 2011 Oct; 49(10):3482-90. PMID: 21849694; PMCID: PMC3187342.
    39. Kolb AW, Schmidt TR, Dyer DW, Brandt CR. Sequence variation in the herpes simplex virus U(S)1 ocular virulence determinant. Invest Ophthalmol Vis Sci. 2011 Jun 28; 52(7):4630-8. PMID: 21519032.
      View in: PubMed
    40. Robinson CM, Rajaiya J, Zhou X, Singh G, Dyer DW, Chodosh J. The E3 CR1-gamma gene in human adenoviruses associated with epidemic keratoconjunctivitis. Virus Res. 2011 Sep; 160(1-2):120-7. PMID: 21683743; PMCID: PMC3163711.
    41. Robinson CM, Seto D, Jones MS, Dyer DW, Chodosh J. Molecular evolution of human species D adenoviruses. Infect Genet Evol. 2011 Aug; 11(6):1208-17. PMID: 21570490; PMCID: PMC3139803.
    42. Robinson CM, Singh G, Henquell C, Walsh MP, Peigue-Lafeuille H, Seto D, Jones MS, Dyer DW, Chodosh J. Computational analysis and identification of an emergent human adenovirus pathogen implicated in a respiratory fatality. Virology. 2011 Jan 20; 409(2):141-7. PMID: 21056888; PMCID: PMC3006489.
    43. Jackson LA, Ducey TF, Day MW, Zaitshik JB, Orvis J, Dyer DW. Transcriptional and functional analysis of the Neisseria gonorrhoeae Fur regulon. J Bacteriol. 2010 Jan; 192(1):77-85. PMID: 19854902; PMCID: PMC2798271.
    44. Mullins MA, Register KB, Bayles DO, Loving CL, Nicholson TL, Brockmeier SL, Dyer DW, Phillips GJ. Characterization and comparative analysis of the genes encoding Haemophilus parasuis outer membrane proteins P2 and P5. J Bacteriol. 2009 Oct; 191(19):5988-6002. PMID: 19633080.
      View in: PubMed
    45. Robinson CM, Rajaiya J, Walsh MP, Seto D, Dyer DW, Jones MS, Chodosh J. Computational analysis of human adenovirus type 22 provides evidence for recombination among species D human adenoviruses in the penton base gene. J Virol. 2009 Sep; 83(17):8980-5. PMID: 19553309; PMCID: PMC2738150.
    46. Ducey TF, Jackson L, Orvis J, Dyer DW. Transcript analysis of nrrF, a Fur repressed sRNA of Neisseria gonorrhoeae. Microb Pathog. 2009 Mar; 46(3):166-70. PMID: 19162160; PMCID: PMC4890603.
    47. Robinson CM, Shariati F, Zaitshik J, Gillaspy AF, Dyer DW, Chodosh J. Human adenovirus type 19: genomic and bioinformatics analysis of a keratoconjunctivitis isolate. Virus Res. 2009 Jan; 139(1):122-6. PMID: 19000724.
      View in: PubMed
    48. Folster JP, Johnson PJ, Jackson L, Dhulipali V, Dyer DW, Shafer WM. MtrR modulates rpoH expression and levels of antimicrobial resistance in Neisseria gonorrhoeae. J Bacteriol. 2009 Jan; 191(1):287-97. PMID: 18978065; PMCID: PMC2612434.
    49. Barua S, McKevitt M, DeGiusti K, Hamm EE, Larabee J, Shakir S, Bryant K, Koehler TM, Blanke SR, Dyer D, Gillaspy A, Ballard JD. The mechanism of Bacillus anthracis intracellular germination requires multiple and highly diverse genetic loci. Infect Immun. 2009 Jan; 77(1):23-31. PMID: 18936179; PMCID: PMC2612280.
    50. Robinson CM, Shariati F, Gillaspy AF, Dyer DW, Chodosh J. Genomic and bioinformatics analysis of human adenovirus type 37: new insights into corneal tropism. BMC Genomics. 2008 May 09; 9:213. PMID: 18471294; PMCID: PMC2397415.
    51. Wang Y, Orvis J, Dyer D, Chen C. Genomic distribution and functions of uptake signal sequences in Actinobacillus actinomycetemcomitans. Microbiology. 2006 Nov; 152(Pt 11):3319-25. PMID: 17074902.
      View in: PubMed
    52. Saban MR, Hellmich HL, Turner M, Nguyen NB, Vadigepalli R, Dyer DW, Hurst RE, Centola M, Saban R. The inflammatory and normal transcriptome of mouse bladder detrusor and mucosa. BMC Physiol. 2006 Jan 18; 6:1. PMID: 16420690; PMCID: PMC1382248.
    53. Harrison A, Dyer DW, Gillaspy A, Ray WC, Mungur R, Carson MB, Zhong H, Gipson J, Gipson M, Johnson LS, Lewis L, Bakaletz LO, Munson RS. Genomic sequence of an otitis media isolate of nontypeable Haemophilus influenzae: comparative study with H. influenzae serotype d, strain KW20. J Bacteriol. 2005 Jul; 187(13):4627-36. PMID: 15968074; PMCID: PMC1151754.
    54. Ducey TF, Carson MB, Orvis J, Stintzi AP, Dyer DW. Identification of the iron-responsive genes of Neisseria gonorrhoeae by microarray analysis in defined medium. J Bacteriol. 2005 Jul; 187(14):4865-74. PMID: 15995201; PMCID: PMC1169496.
    55. Kupfer DM, Drabenstot SD, Buchanan KL, Lai H, Zhu H, Dyer DW, Roe BA, Murphy JW. Introns and splicing elements of five diverse fungi. Eukaryot Cell. 2004 Oct; 3(5):1088-100. PMID: 15470237; PMCID: PMC522613.
    56. Rohde KH, Dyer DW. Analysis of haptoglobin and hemoglobin-haptoglobin interactions with the Neisseria meningitidis TonB-dependent receptor HpuAB by flow cytometry. Infect Immun. 2004 May; 72(5):2494-506. PMID: 15102756; PMCID: PMC387877.
    57. Munson RS, Harrison A, Gillaspy A, Ray WC, Carson M, Armbruster D, Gipson J, Gipson M, Johnson L, Lewis L, Dyer DW, Bakaletz LO. Partial analysis of the genomes of two nontypeable Haemophilus influenzae otitis media isolates. Infect Immun. 2004 May; 72(5):3002-10. PMID: 15102813; PMCID: PMC387840.
    58. Drabenstot SD, Kupfer DM, White JD, Dyer DW, Roe BA, Buchanan KL, Murphy JW. FELINES: a utility for extracting and examining EST-defined introns and exons. Nucleic Acids Res. 2003 Nov 15; 31(22):e141. PMID: 14602934; PMCID: PMC275578.
    59. Rohde KH, Dyer DW. Mechanisms of iron acquisition by the human pathogens Neisseria meningitidis and Neisseria gonorrhoeae. Front Biosci. 2003 Sep 01; 8:d1186-218. PMID: 12957813.
      View in: PubMed
    60. Williams WA, Hendrickson A, Gillaspy AF, Dyer DW, Lewis LA. Oligonucleotide analysis by sequential injection before analysis (SIBA) capillary electrophoresis. Anal Biochem. 2003 Feb 01; 313(1):183-5. PMID: 12576078.
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