Jonathan Wren to Humans
This is a "connection" page, showing publications Jonathan Wren has written about Humans.
Connection Strength
1.172
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Many chronological aging clocks can be found throughout the epigenome: Implications for quantifying biological aging. Aging Cell. 2021 11; 20(11):e13492.
Score: 0.044
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MNEMONIC: MetageNomic Experiment Mining to create an OTU Network of Inhabitant Correlations. BMC Bioinformatics. 2019 Mar 14; 20(Suppl 2):96.
Score: 0.037
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Proceedings of the 2018 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. BMC Bioinformatics. 2019 Mar 14; 20(Suppl 2):95.
Score: 0.037
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Algorithmic identification of discrepancies between published ratios and their reported confidence intervals and P-values. Bioinformatics. 2018 05 15; 34(10):1758-1766.
Score: 0.035
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DeepGO: predicting protein functions from sequence and interactions using a deep ontology-aware classifier. Bioinformatics. 2018 02 15; 34(4):660-668.
Score: 0.034
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PyBEL: a computational framework for Biological Expression Language. Bioinformatics. 2018 02 15; 34(4):703-704.
Score: 0.034
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ALE: automated label extraction from GEO metadata. BMC Bioinformatics. 2017 12 28; 18(Suppl 14):509.
Score: 0.034
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Bioinformatics programs are 31-fold over-represented among the highest impact scientific papers of the past two decades. Bioinformatics. 2016 09 01; 32(17):2686-91.
Score: 0.030
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Detrimental effects of duplicate reads and low complexity regions on RNA- and ChIP-seq data. BMC Bioinformatics. 2015; 16 Suppl 13:S10.
Score: 0.029
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Prioritizing uncharacterized genes in the search for glioma biomarkers. CNS Oncol. 2014 Mar; 3(2):93-5.
Score: 0.026
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Experimental validation of 5 in-silico predicted glioma biomarkers. Neuro Oncol. 2013 Dec; 15(12):1625-34.
Score: 0.026
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Proceedings of the 2013 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. BMC Bioinformatics. 2013; 14 Suppl 14:S1.
Score: 0.025
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mirCoX: a database of miRNA-mRNA expression correlations derived from RNA-seq meta-analysis. BMC Bioinformatics. 2013; 14 Suppl 14:S17.
Score: 0.025
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Systematic classification of non-coding RNAs by epigenomic similarity. BMC Bioinformatics. 2013; 14 Suppl 14:S2.
Score: 0.025
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GFP affects human T cell activation and cytokine production following in vitro stimulation. PLoS One. 2013; 8(4):e50068.
Score: 0.025
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ELTD1, a potential new biomarker for gliomas. Neurosurgery. 2013 Jan; 72(1):77-90; discussion 91.
Score: 0.024
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High-throughput processing and normalization of one-color microarrays for transcriptional meta-analyses. BMC Bioinformatics. 2011 Oct 18; 12 Suppl 10:S2.
Score: 0.022
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Predicting gene ontology from a global meta-analysis of 1-color microarray experiments. BMC Bioinformatics. 2011 Oct 18; 12 Suppl 10:S14.
Score: 0.022
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Question answering systems in biology and medicine--the time is now. Bioinformatics. 2011 Jul 15; 27(14):2025-6.
Score: 0.022
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A global meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide. Bioinformatics. 2009 Jul 01; 25(13):1694-701.
Score: 0.019
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The write position. A survey of perceived contributions to papers based on byline position and number of authors. EMBO Rep. 2007 Nov; 8(11):988-91.
Score: 0.017
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A system-wide analysis of differentially expressed genes in ectopic and eutopic endometrium. Hum Reprod. 2007 Aug; 22(8):2093-102.
Score: 0.016
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Uniform resource locator decay in dermatology journals: author attitudes and preservation practices. Arch Dermatol. 2006 Sep; 142(9):1147-52.
Score: 0.016
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E-mail decay rates among corresponding authors in MEDLINE. The ability to communicate with and request materials from authors is being eroded by the expiration of e-mail addresses. EMBO Rep. 2006 Feb; 7(2):122-7.
Score: 0.015
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Truth, probability, and frameworks. PLoS Med. 2005 Nov; 2(11):e361.
Score: 0.015
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Extending the mutual information measure to rank inferred literature relationships. BMC Bioinformatics. 2004 Oct 07; 5:145.
Score: 0.014
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The Isolation and In Vitro Differentiation of Primary Fetal Baboon Tracheal Epithelial Cells for the Study of SARS-CoV-2 Host-Virus Interactions. Viruses. 2023 03 28; 15(4).
Score: 0.012
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EWI2 and its relatives in Tetraspanin-enriched membrane domains regulate malignancy. Oncogene. 2023 03; 42(12):861-868.
Score: 0.012
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EWI2 prevents EGFR from clustering and endocytosis to reduce tumor cell movement and proliferation. Cell Mol Life Sci. 2022 Jun 30; 79(7):389.
Score: 0.012
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Hypomethylation of miR-17-92 cluster in lupus T cells and no significant role for genetic factors in the lupus-associated DNA methylation signature. Ann Rheum Dis. 2022 10; 81(10):1428-1437.
Score: 0.012
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EWI2 promotes endolysosome-mediated turnover of growth factor receptors and integrins to suppress lung cancer. Cancer Lett. 2022 06 28; 536:215641.
Score: 0.011
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The NOTCH3 Downstream Target HEYL Is Required for Efficient Human Airway Basal Cell Differentiation. Cells. 2021 11 18; 10(11).
Score: 0.011
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Characterization of the SARS-CoV-2 Host Response in Primary Human Airway Epithelial Cells from Aged Individuals. Viruses. 2021 08 12; 13(8).
Score: 0.011
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Biallelic variants in KARS1 are associated with neurodevelopmental disorders and hearing loss recapitulated by the knockout zebrafish. Genet Med. 2021 10; 23(10):1933-1943.
Score: 0.011
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Cigarette Smoke Activates NOTCH3 to Promote Goblet Cell Differentiation in Human Airway Epithelial Cells. Am J Respir Cell Mol Biol. 2021 04; 64(4):426-440.
Score: 0.011
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Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study. Am J Hum Genet. 2021 01 07; 108(1):84-99.
Score: 0.010
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MicroRNA-195 controls MICU1 expression and tumor growth in ovarian cancer. EMBO Rep. 2020 10 05; 21(10):e48483.
Score: 0.010
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CSAG1 maintains the integrity of the mitotic centrosome in cells with defective p53. J Cell Sci. 2020 05 27; 133(10).
Score: 0.010
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Circulating anti-geronic factors from heterochonic parabionts promote vascular rejuvenation in aged mice: transcriptional footprint of mitochondrial protection, attenuation of oxidative stress, and rescue of endothelial function by young blood. Geroscience. 2020 04; 42(2):727-748.
Score: 0.010
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KRCC1: A potential therapeutic target in ovarian cancer. FASEB J. 2020 02; 34(2):2287-2300.
Score: 0.010
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Optimized monoclonal antibody treatment against ELTD1 for GBM in a G55 xenograft mouse model. J Cell Mol Med. 2020 01; 24(2):1738-1749.
Score: 0.010
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Characterization of cxorf21 Provides Molecular Insight Into Female-Bias Immune Response in SLE Pathogenesis. Front Immunol. 2019; 10:2160.
Score: 0.010
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A TMEFF2-regulated cell cycle derived gene signature is prognostic of recurrence risk in prostate cancer. BMC Cancer. 2019 May 06; 19(1):423.
Score: 0.009
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The Need for Greater Rigor in Childhood Nutrition and Obesity Research. JAMA Pediatr. 2019 04 01; 173(4):311-312.
Score: 0.009
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Insights From Analysis of Human Antigen-Specific Memory B Cell Repertoires. Front Immunol. 2018; 9:3064.
Score: 0.009
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CAGm: a repository of germline microsatellite variations in the 1000 genomes project. Nucleic Acids Res. 2019 01 08; 47(D1):D39-D45.
Score: 0.009
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The role of DNA methylation in epigenetics of aging. Pharmacol Ther. 2019 03; 195:172-185.
Score: 0.009
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ARID3a gene profiles are strongly associated with human interferon alpha production. J Autoimmun. 2019 01; 96:158-167.
Score: 0.009
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Endothelial dysfunction and angiogenesis impairment in the ageing vasculature. Nat Rev Cardiol. 2018 09; 15(9):555-565.
Score: 0.009
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Tetraspanin-enriched microdomains regulate digitation junctions. Cell Mol Life Sci. 2018 09; 75(18):3423-3439.
Score: 0.009
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Profiling of m6A RNA modifications identified an age-associated regulation of AGO2 mRNA stability. Aging Cell. 2018 06; 17(3):e12753.
Score: 0.009
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Predictive bioinformatics identifies novel regulators of proliferation in a cancer stem cell model. Stem Cell Res. 2018 01; 26:1-7.
Score: 0.008
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CD4+CD28+KIR+CD11ahi T cells correlate with disease activity and are characterized by a pro-inflammatory epigenetic and transcriptional profile in lupus patients. J Autoimmun. 2018 01; 86:19-28.
Score: 0.008
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Sexually divergent DNA methylation patterns with hippocampal aging. Aging Cell. 2017 12; 16(6):1342-1352.
Score: 0.008
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Activated signature of antiphospholipid syndrome neutrophils reveals potential therapeutic target. JCI Insight. 2017 09 21; 2(18).
Score: 0.008
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GTSE1 regulates spindle microtubule dynamics to control Aurora B kinase and Kif4A chromokinesin on chromosome arms. J Cell Biol. 2017 10 02; 216(10):3117-3132.
Score: 0.008
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Pancreatic Polypeptide Cell Proliferation in the Pancreas and Duodenum Coexisting in a Patient With Pancreatic Adenocarcinoma Treated With a GLP-1 Analog. Pancreas. 2017 07; 46(6):820-824.
Score: 0.008
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Systemic lupus erythematosus biomarkers: the challenging quest. Rheumatology (Oxford). 2017 04 01; 56(suppl_1):i32-i45.
Score: 0.008
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The Development of Translational Biomarkers as a Tool for Improving the Understanding, Diagnosis and Treatment of Chronic Neuropathic Pain. Mol Neurobiol. 2018 03; 55(3):2420-2430.
Score: 0.008
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ELTD1, an effective anti-angiogenic target for gliomas: preclinical assessment in mouse GL261 and human G55 xenograft glioma models. Neuro Oncol. 2017 02 01; 19(2):175-185.
Score: 0.008
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Histone Deacetylase 5 Is Overexpressed in Scleroderma Endothelial Cells and Impairs Angiogenesis via Repression of Proangiogenic Factors. Arthritis Rheumatol. 2016 12; 68(12):2975-2985.
Score: 0.008
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Circulating IGF-1 deficiency exacerbates hypertension-induced microvascular rarefaction in the mouse hippocampus and retrosplenial cortex: implications for cerebromicrovascular and brain aging. Age (Dordr). 2016 Aug; 38(4):273-289.
Score: 0.008
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Epigenetic Reprogramming in Naive CD4+ T Cells Favoring T Cell Activation and Non-Th1 Effector T Cell Immune Response as an Early Event in Lupus Flares. Arthritis Rheumatol. 2016 09; 68(9):2200-9.
Score: 0.008
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Hypomethylation coordinates antagonistically with hypermethylation in cancer development: a case study of leukemia. Hum Genomics. 2016 07 25; 10 Suppl 2:18.
Score: 0.008
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Identification of a novel senolytic agent, navitoclax, targeting the Bcl-2 family of anti-apoptotic factors. Aging Cell. 2016 06; 15(3):428-35.
Score: 0.008
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High-density genotyping of immune-related loci identifies new SLE risk variants in individuals with Asian ancestry. Nat Genet. 2016 Mar; 48(3):323-30.
Score: 0.007
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Histone demethylase JMJD2A drives prostate tumorigenesis through transcription factor ETV1. J Clin Invest. 2016 Feb; 126(2):706-20.
Score: 0.007
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Tetraspanin CD82: a suppressor of solid tumors and a modulator of membrane heterogeneity. Cancer Metastasis Rev. 2015 Dec; 34(4):619-33.
Score: 0.007
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Prospective evaluation of protein C and factor VIII in prediction of cancer-associated thrombosis. Thromb Res. 2015 Dec; 136(6):1120-5.
Score: 0.007
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Genetic Variation in the Platelet Endothelial Aggregation Receptor 1 Gene Results in Endothelial Dysfunction. PLoS One. 2015; 10(9):e0138795.
Score: 0.007
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Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study. Arthritis Rheumatol. 2015 May; 67(5):1361-8.
Score: 0.007
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Ribosomal and immune transcripts associate with relapse in acquired ADAMTS13-deficient thrombotic thrombocytopenic purpura. PLoS One. 2015; 10(2):e0117614.
Score: 0.007
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Epigenome profiling reveals significant DNA demethylation of interferon signature genes in lupus neutrophils. J Autoimmun. 2015 Apr; 58:59-66.
Score: 0.007
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Epigenomic elements enriched in the promoters of autoimmunity susceptibility genes. Epigenetics. 2014 Feb; 9(2):276-85.
Score: 0.006
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Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjögren's syndrome. Nat Genet. 2013 Nov; 45(11):1284-92.
Score: 0.006
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Genome-wide DNA methylation study suggests epigenetic accessibility and transcriptional poising of interferon-regulated genes in naïve CD4+ T cells from lupus patients. J Autoimmun. 2013 Jun; 43:78-84.
Score: 0.006
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Functional characterization of the MECP2/IRAK1 lupus risk haplotype in human T cells and a human MECP2 transgenic mouse. J Autoimmun. 2013 Mar; 41:168-74.
Score: 0.006
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Fine mapping and conditional analysis identify a new mutation in the autoimmunity susceptibility gene BLK that leads to reduced half-life of the BLK protein. Ann Rheum Dis. 2012 Jul; 71(7):1219-26.
Score: 0.006
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Olfactomedin 4 defines a subset of human neutrophils. J Leukoc Biol. 2012 Mar; 91(3):495-500.
Score: 0.006
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Novel protein ADTRP regulates TFPI expression and function in human endothelial cells in normal conditions and in response to androgen. Blood. 2011 Oct 20; 118(16):4463-71.
Score: 0.005
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Genome-wide DNA methylation patterns in CD4+ T cells from patients with systemic lupus erythematosus. Epigenetics. 2011 May; 6(5):593-601.
Score: 0.005
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Elevated AKR1C3 expression promotes prostate cancer cell survival and prostate cell-mediated endothelial cell tube formation: implications for prostate cancer progression. BMC Cancer. 2010 Dec 06; 10:672.
Score: 0.005
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DNA methylome in human CD4+ T cells identifies transcriptionally repressive and non-repressive methylation peaks. Genes Immun. 2010 Oct; 11(7):554-60.
Score: 0.005
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Ska3 is required for spindle checkpoint silencing and the maintenance of chromosome cohesion in mitosis. Curr Biol. 2009 Sep 15; 19(17):1467-72.
Score: 0.005
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Variants within MECP2, a key transcription regulator, are associated with increased susceptibility to lupus and differential gene expression in patients with systemic lupus erythematosus. Arthritis Rheum. 2009 Apr; 60(4):1076-84.
Score: 0.005
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eTBLAST: a web server to identify expert reviewers, appropriate journals and similar publications. Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W12-5.
Score: 0.004
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Melatonin administration does not affect isoproterenol-induced LVH. IEEE Eng Med Biol Mag. 2006 May-Jun; 25(3):84-7.
Score: 0.004
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ARROGANT: an application to manipulate large gene collections. Bioinformatics. 2002 Nov; 18(11):1410-7.
Score: 0.003