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Zhili He

TitleAdjunct Professor
InstitutionUniversity of Oklahoma, Norman
DepartmentMicrobiology and Plant Biology
Address770 Van Vleet Oval
Norman OK 73019
Phone405/325-3958
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. He Z, Deng Y, Xu M, Li J, Liang J, Xiong J, Yu H, Wu B, Wu L, Xue K, Shi S, Carrillo Y, Van Nostrand JD, Hobbie SE, Reich PB, Schadt CW, Kent AD, Pendall E, Wallenstein M, Luo Y, Yan Q, Zhou J. Microbial functional genes commonly respond to elevated carbon dioxide. Environ Int. 2020 11; 144:106068. PMID: 32871382.
      Citations:    Fields:    Translation:PHPublic Health
    2. Tian R, Ning D, He Z, Zhang P, Spencer SJ, Gao S, Shi W, Wu L, Zhang Y, Yang Y, Adams BG, Rocha AM, Detienne BL, Lowe KA, Joyner DC, Klingeman DM, Arkin AP, Fields MW, Hazen TC, Stahl DA, Alm EJ, Zhou J. Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity. Microbiome. 2020 04 06; 8(1):51. PMID: 32252814.
      Citations: 7     Fields:    Translation:Cells
    3. Feng J, Wang C, Lei J, Yang Y, Yan Q, Zhou X, Tao X, Ning D, Yuan MM, Qin Y, Shi ZJ, Guo X, He Z, Van Nostrand JD, Wu L, Bracho-Garillo RG, Penton CR, Cole JR, Konstantinidis KT, Luo Y, Schuur EAG, Tiedje JM, Zhou J. Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community. Microbiome. 2020 01 17; 8(1):3. PMID: 31952472.
      Citations: 3     Fields:    Translation:PHPublic Health
    4. Shi Z, Yin H, Van Nostrand JD, Voordeckers JW, Tu Q, Deng Y, Yuan M, Zhou A, Zhang P, Xiao N, Ning D, He Z, Wu L, Zhou J. Functional Gene Array-Based Ultrasensitive and Quantitative Detection of Microbial Populations in Complex Communities. mSystems. 2019 Jun 18; 4(4). PMID: 31213523.
      Citations:    
    5. Feng J, Penton CR, He Z, Van Nostrand JD, Yuan MM, Wu L, Wang C, Qin Y, Shi ZJ, Guo X, Schuur EAG, Luo Y, Bracho R, Konstantinidis KT, Cole JR, Tiedje JM, Yang Y, Zhou J. Long-Term Warming in Alaska Enlarges the Diazotrophic Community in Deep Soils. mBio. 2019 02 26; 10(1). PMID: 30808694.
      Citations: 3     Fields:    Translation:CellsPHPublic Health
    6. Zhou A, Lau R, Baran R, Ma J, von Netzer F, Shi W, Gorman-Lewis D, Kempher ML, He Z, Qin Y, Shi Z, Zane GM, Wu L, Bowen BP, Northen TR, Hillesland KL, Stahl DA, Wall JD, Arkin AP, Zhou J. Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium, Desulfovibrio vulgaris. mBio. 2017 11 14; 8(6). PMID: 29138306.
      Citations: 2     Fields:    Translation:Cells
    7. Xu T, Li Y, He Z, Van Nostrand JD, Zhou J. Cas9 Nickase-Assisted RNA Repression Enables Stable and Efficient Manipulation of Essential Metabolic Genes in Clostridium cellulolyticum. Front Microbiol. 2017; 8:1744. PMID: 28936208.
      Citations:    
    8. Yuan MM, Zhang J, Xue K, Wu L, Deng Y, Deng J, Hale L, Zhou X, He Z, Yang Y, Van Nostrand JD, Schuur EAG, Konstantinidis KT, Penton CR, Cole JR, Tiedje JM, Luo Y, Zhou J. Microbial functional diversity covaries with permafrost thaw-induced environmental heterogeneity in tundra soil. Glob Chang Biol. 2018 01; 24(1):297-307. PMID: 28715138.
      Citations:    Fields:    Translation:AnimalsPHPublic Health
    9. Xie X, He Z, Hu X, Yin H, Liu X, Yang Y. Large-scale seaweed cultivation diverges water and sediment microbial communities in the coast of Nan'ao Island, South China Sea. Sci Total Environ. 2017 Nov 15; 598:97-108. PMID: 28437776.
      Citations: 3     Fields:    Translation:AnimalsCellsPHPublic Health
    10. Zhang P, He Z, Van Nostrand JD, Qin Y, Deng Y, Wu L, Tu Q, Wang J, Schadt CW, W Fields M, Hazen TC, Arkin AP, Stahl DA, Zhou J. Dynamic Succession of Groundwater Sulfate-Reducing Communities during Prolonged Reduction of Uranium in a Contaminated Aquifer. Environ Sci Technol. 2017 04 04; 51(7):3609-3620. PMID: 28300407.
      Citations: 4     Fields:    Translation:CellsPHPublic Health
    11. Xue K, Yuan MM, Xie J, Li D, Qin Y, Hale LE, Wu L, Deng Y, He Z, Van Nostrand JD, Luo Y, Tiedje JM, Zhou J. Annual Removal of Aboveground Plant Biomass Alters Soil Microbial Responses to Warming. mBio. 2016 Sep 27; 7(5). PMID: 27677789.
      Citations: 6     Fields:    
    12. Qiu D, Xie M, Dai J, An W, Wei H, Tian C, Kempher ML, Zhou A, He Z, Gu B, Zhou J. Differential Regulation of the Two Ferrochelatase Paralogues in Shewanella loihica PV-4 in Response to Environmental Stresses. Appl Environ Microbiol. 2016 09 01; 82(17):5077-88. PMID: 27287322.
      Citations: 3     Fields:    Translation:Cells
    13. Xue K, Xie J, Zhou A, Liu F, Li D, Wu L, Deng Y, He Z, Van Nostrand JD, Luo Y, Zhou J. Warming Alters Expressions of Microbial Functional Genes Important to Ecosystem Functioning. Front Microbiol. 2016; 7:668. PMID: 27199978.
      Citations:    
    14. Hemme CL, Green SJ, Rishishwar L, Prakash O, Pettenato A, Chakraborty R, Deutschbauer AM, Van Nostrand JD, Wu L, He Z, Jordan IK, Hazen TC, Arkin AP, Kostka JE, Zhou J. Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community. mBio. 2016 Apr 05; 7(2):e02234-15. PMID: 27048805.
      Citations: 18     Fields:    Translation:Cells
    15. Hemme CL, Tu Q, Shi Z, Qin Y, Gao W, Deng Y, Nostrand JD, Wu L, He Z, Chain PS, Tringe SG, Fields MW, Rubin EM, Tiedje JM, Hazen TC, Arkin AP, Zhou J. Comparative metagenomics reveals impact of contaminants on groundwater microbiomes. Front Microbiol. 2015; 6:1205. PMID: 26583008.
      Citations:    
    16. Zhang P, Van Nostrand JD, He Z, Chakraborty R, Deng Y, Curtis D, Fields MW, Hazen TC, Arkin AP, Zhou J. A Slow-Release Substrate Stimulates Groundwater Microbial Communities for Long-Term in Situ Cr(VI) Reduction. Environ Sci Technol. 2015 Nov 03; 49(21):12922-31. PMID: 25835088.
      Citations: 6     Fields:    Translation:CellsPHPublic Health
    17. Qu Y, Zhang X, Ma Q, Deng J, Deng Y, Van Nostrand JD, Wu L, He Z, Qin Y, Zhou J, Zhou J. Microbial Community Dynamics and Activity Link to Indigo Production from Indole in Bioaugmented Activated Sludge Systems. PLoS One. 2015; 10(9):e0138455. PMID: 26372223.
      Citations: 3     Fields:    Translation:Cells
    18. Shi S, Nuccio E, Herman DJ, Rijkers R, Estera K, Li J, da Rocha UN, He Z, Pett-Ridge J, Brodie EL, Zhou J, Firestone M. Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons. mBio. 2015 Aug 04; 6(4):e00746. PMID: 26242625.
      Citations: 42     Fields:    Translation:AnimalsPHPublic Health
    19. Xu T, Li Y, Shi Z, Hemme CL, Li Y, Zhu Y, Van Nostrand JD, He Z, Zhou J. Efficient Genome Editing in Clostridium cellulolyticum via CRISPR-Cas9 Nickase. Appl Environ Microbiol. 2015 Jul; 81(13):4423-31. PMID: 25911483.
      Citations: 62     Fields:    Translation:Cells
    20. Zhang P, Wu WM, Van Nostrand JD, Deng Y, He Z, Gihring T, Zhang G, Schadt CW, Watson D, Jardine P, Criddle CS, Brooks S, Marsh TL, Tiedje JM, Arkin AP, Zhou J. Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during Sustained In Situ U(VI) Reduction. Appl Environ Microbiol. 2015 Jun 15; 81(12):4164-72. PMID: 25862231.
      Citations: 6     Fields:    Translation:PHPublic Health
    21. Zhou A, Hillesland KL, He Z, Schackwitz W, Tu Q, Zane GM, Ma Q, Qu Y, Stahl DA, Wall JD, Hazen TC, Fields MW, Arkin AP, Zhou J. Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris. ISME J. 2015 Nov; 9(11):2360-72. PMID: 25848870.
      Citations: 8     Fields:    Translation:CellsPHPublic Health
    22. Xiong J, He Z, Shi S, Kent A, Deng Y, Wu L, Van Nostrand JD, Zhou J. Elevated CO2 shifts the functional structure and metabolic potentials of soil microbial communities in a C4 agroecosystem. Sci Rep. 2015 Mar 20; 5:9316. PMID: 25791904.
      Citations: 8     Fields:    Translation:PHPublic Health
    23. Yan Q, Bi Y, Deng Y, He Z, Wu L, Van Nostrand JD, Shi Z, Li J, Wang X, Hu Z, Yu Y, Zhou J. Impacts of the Three Gorges Dam on microbial structure and potential function. Sci Rep. 2015 Feb 27; 5:8605. PMID: 25721383.
      Citations: 23     Fields:    Translation:CellsPHPublic Health
    24. Tu Q, Yuan M, He Z, Deng Y, Xue K, Wu L, Hobbie SE, Reich PB, Zhou J. Fungal communities respond to long-term CO2 elevation by community reassembly. Appl Environ Microbiol. 2015 Apr; 81(7):2445-54. PMID: 25616796.
      Citations: 5     Fields:    Translation:AnimalsPHPublic Health
    25. Deng J, Gu Y, Zhang J, Xue K, Qin Y, Yuan M, Yin H, He Z, Wu L, Schuur EA, Tiedje JM, Zhou J. Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska. Mol Ecol. 2015 Jan; 24(1):222-34. PMID: 25424441.
      Citations: 20     Fields:    Translation:CellsPHPublic Health
    26. Tu Q, Yu H, He Z, Deng Y, Wu L, Van Nostrand JD, Zhou A, Voordeckers J, Lee YJ, Qin Y, Hemme CL, Shi Z, Xue K, Yuan T, Wang A, Zhou J. GeoChip 4: a functional gene-array-based high-throughput environmental technology for microbial community analysis. Mol Ecol Resour. 2014 Sep; 14(5):914-28. PMID: 24520909.
      Citations: 56     Fields:    Translation:PHPublic Health
    27. Tu Q, He Z, Li Y, Chen Y, Deng Y, Lin L, Hemme CL, Yuan T, Van Nostrand JD, Wu L, Zhou X, Shi W, Li L, Xu J, Zhou J. Development of HuMiChip for functional profiling of human microbiomes. PLoS One. 2014; 9(3):e90546. PMID: 24595026.
      Citations: 3     Fields:    Translation:Humans
    28. Tu Q, He Z, Zhou J. Strain/species identification in metagenomes using genome-specific markers. Nucleic Acids Res. 2014 Apr; 42(8):e67. PMID: 24523352.
      Citations: 21     Fields:    Translation:Humans
    29. Xu T, Li Y, He Z, Zhou J. Dockerin-containing protease inhibitor protects key cellulosomal cellulases from proteolysis in Clostridium cellulolyticum. Mol Microbiol. 2014 Feb; 91(4):694-705. PMID: 24330350.
      Citations: 1     Fields:    Translation:Cells
    30. Xu T, Li Y, Van Nostrand JD, He Z, Zhou J. Cas9-based tools for targeted genome editing and transcriptional control. Appl Environ Microbiol. 2014 Mar; 80(5):1544-52. PMID: 24389925.
      Citations: 19     Fields:    Translation:Cells
    31. He Z, Xiong J, Kent AD, Deng Y, Xue K, Wang G, Wu L, Van Nostrand JD, Zhou J. Distinct responses of soil microbial communities to elevated CO2 and O3 in a soybean agro-ecosystem. ISME J. 2014 Mar; 8(3):714-726. PMID: 24108327.
      Citations: 12     Fields:    Translation:AnimalsPHPublic Health
    32. Zhou A, He Z, Qin Y, Lu Z, Deng Y, Tu Q, Hemme CL, Van Nostrand JD, Wu L, Hazen TC, Arkin AP, Zhou J. StressChip as a high-throughput tool for assessing microbial community responses to environmental stresses. Environ Sci Technol. 2013 Sep 03; 47(17):9841-9. PMID: 23889170.
      Citations: 6     Fields:    Translation:AnimalsCellsPHPublic Health
    33. Kang S, Van Nostrand JD, Gough HL, He Z, Hazen TC, Stahl DA, Zhou J. Functional gene array-based analysis of microbial communities in heavy metals-contaminated lake sediments. FEMS Microbiol Ecol. 2013 Nov; 86(2):200-14. PMID: 23710534.
      Citations: 11     Fields:    Translation:Cells
    34. Qiu D, Wei H, Tu Q, Yang Y, Xie M, Chen J, Pinkerton MH, Liang Y, He Z, Zhou J. Combined genomics and experimental analyses of respiratory characteristics of Shewanella putrefaciens W3-18-1. Appl Environ Microbiol. 2013 Sep; 79(17):5250-7. PMID: 23811511.
      Citations: 8     Fields:    Translation:Cells
    35. Lee YJ, van Nostrand JD, Tu Q, Lu Z, Cheng L, Yuan T, Deng Y, Carter MQ, He Z, Wu L, Yang F, Xu J, Zhou J. The PathoChip, a functional gene array for assessing pathogenic properties of diverse microbial communities. ISME J. 2013 Oct; 7(10):1974-84. PMID: 23765101.
      Citations: 5     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    36. Tu Q, He Z, Deng Y, Zhou J. Strain/species-specific probe design for microbial identification microarrays. Appl Environ Microbiol. 2013 Aug; 79(16):5085-8. PMID: 23747703.
      Citations: 3     Fields:    Translation:HumansCells
    37. Zhou A, Baidoo E, He Z, Mukhopadhyay A, Baumohl JK, Benke P, Joachimiak MP, Xie M, Song R, Arkin AP, Hazen TC, Keasling JD, Wall JD, Stahl DA, Zhou J. Characterization of NaCl tolerance in Desulfovibrio vulgaris Hildenborough through experimental evolution. ISME J. 2013 Sep; 7(9):1790-802. PMID: 23575373.
      Citations: 16     Fields:    Translation:Cells
    38. Xue K, Wu L, Deng Y, He Z, Van Nostrand J, Robertson PG, Schmidt TM, Zhou J. Functional gene differences in soil microbial communities from conventional, low-input, and organic farmlands. Appl Environ Microbiol. 2013 Feb; 79(4):1284-92. PMID: 23241975.
      Citations: 13     Fields:    Translation:PHPublic Health
    39. Nostrand JD, He Z, Zhou J. Use of functional gene arrays for elucidating in situ biodegradation. Front Microbiol. 2012; 3:339. PMID: 23049526.
      Citations:    
    40. Deng Y, Jiang YH, Yang Y, He Z, Luo F, Zhou J. Molecular ecological network analyses. BMC Bioinformatics. 2012 May 30; 13:113. PMID: 22646978.
      Citations: 183     Fields:    Translation:PHPublic Health
    41. Deng Y, He Z, Xu M, Qin Y, Van Nostrand JD, Wu L, Roe BA, Wiley G, Hobbie SE, Reich PB, Zhou J. Elevated carbon dioxide alters the structure of soil microbial communities. Appl Environ Microbiol. 2012 Apr; 78(8):2991-5. PMID: 22307288.
      Citations: 19     Fields:    Translation:PHPublic Health
    42. He Z, Van Nostrand JD, Zhou J. Applications of functional gene microarrays for profiling microbial communities. Curr Opin Biotechnol. 2012 Jun; 23(3):460-6. PMID: 22226464.
      Citations: 24     Fields:    Translation:HumansPHPublic Health
    43. Zhou A, Chen YI, Zane GM, He Z, Hemme CL, Joachimiak MP, Baumohl JK, He Q, Fields MW, Arkin AP, Wall JD, Hazen TC, Zhou J. Functional characterization of Crp/Fnr-type global transcriptional regulators in Desulfovibrio vulgaris Hildenborough. Appl Environ Microbiol. 2012 Feb; 78(4):1168-77. PMID: 22156435.
      Citations: 10     Fields:    Translation:Cells
    44. He Z, Deng Y, Zhou J. Development of functional gene microarrays for microbial community analysis. Curr Opin Biotechnol. 2012 Feb; 23(1):49-55. PMID: 22100036.
      Citations: 30     Fields:    Translation:HumansCellsPHPublic Health
    45. Hemme CL, Fields MW, He Q, Deng Y, Lin L, Tu Q, Mouttaki H, Zhou A, Feng X, Zuo Z, Ramsay BD, He Z, Wu L, Van Nostrand J, Xu J, Tang YJ, Wiegel J, Phelps TJ, Zhou J. Correlation of genomic and physiological traits of thermoanaerobacter species with biofuel yields. Appl Environ Microbiol. 2011 Nov; 77(22):7998-8008. PMID: 21948836.
      Citations: 18     Fields:    Translation:Cells
    46. Liu A, Wu L, He Z, Zhou J. Development of highly fluorescent silica nanoparticles chemically doped with organic dye for sensitive DNA microarray detection. Anal Bioanal Chem. 2011 Oct; 401(6):2003-11. PMID: 21822973.
      Citations: 4     Fields:    Translation:Animals
    47. He Z, Piceno Y, Deng Y, Xu M, Lu Z, Desantis T, Andersen G, Hobbie SE, Reich PB, Zhou J. The phylogenetic composition and structure of soil microbial communities shifts in response to elevated carbon dioxide. ISME J. 2012 Feb; 6(2):259-72. PMID: 21796217.
      Citations: 23     Fields:    Translation:AnimalsCellsPHPublic Health
    48. Zhou J, He Q, Hemme CL, Mukhopadhyay A, Hillesland K, Zhou A, He Z, Van Nostrand JD, Hazen TC, Stahl DA, Wall JD, Arkin AP. How sulphate-reducing microorganisms cope with stress: lessons from systems biology. Nat Rev Microbiol. 2011 Jun; 9(6):452-66. PMID: 21572460.
      Citations: 36     Fields:    Translation:CellsPHPublic Health
    49. Van Nostrand JD, Wu L, Wu WM, Huang Z, Gentry TJ, Deng Y, Carley J, Carroll S, He Z, Gu B, Luo J, Criddle CS, Watson DB, Jardine PM, Marsh TL, Tiedje JM, Hazen TC, Zhou J. Dynamics of microbial community composition and function during in situ bioremediation of a uranium-contaminated aquifer. Appl Environ Microbiol. 2011 Jun; 77(11):3860-9. PMID: 21498771.
      Citations: 15     Fields:    Translation:CellsPHPublic Health
    50. Zhou J, Deng Y, Luo F, He Z, Tu Q, Zhi X. Functional molecular ecological networks. mBio. 2010 Oct 05; 1(4). PMID: 20941329.
      Citations: 102     Fields:    Translation:CellsPHPublic Health
    51. Zhou A, He Z, Redding-Johanson AM, Mukhopadhyay A, Hemme CL, Joachimiak MP, Luo F, Deng Y, Bender KS, He Q, Keasling JD, Stahl DA, Fields MW, Hazen TC, Arkin AP, Wall JD, Zhou J. Hydrogen peroxide-induced oxidative stress responses in Desulfovibrio vulgaris Hildenborough. Environ Microbiol. 2010 Oct; 12(10):2645-57. PMID: 20482586.
      Citations: 18     Fields:    Translation:Cells
    52. Hemme CL, Mouttaki H, Lee YJ, Zhang G, Goodwin L, Lucas S, Copeland A, Lapidus A, Glavina del Rio T, Tice H, Saunders E, Brettin T, Detter JC, Han CS, Pitluck S, Land ML, Hauser LJ, Kyrpides N, Mikhailova N, He Z, Wu L, Van Nostrand JD, Henrissat B, He Q, Lawson PA, Tanner RS, Lynd LR, Wiegel J, Fields MW, Arkin AP, Schadt CW, Stevenson BS, McInerney MJ, Yang Y, Dong H, Xing D, Ren N, Wang A, Huhnke RL, Mielenz JR, Ding SY, Himmel ME, Taghavi S, van der Lelie D, Rubin EM, Zhou J. Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production. J Bacteriol. 2010 Dec; 192(24):6494-6. PMID: 20889752.
      Citations: 28     Fields:    Translation:Cells
    53. He Z, Deng Y, Van Nostrand JD, Tu Q, Xu M, Hemme CL, Li X, Wu L, Gentry TJ, Yin Y, Liebich J, Hazen TC, Zhou J. GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity. ISME J. 2010 Sep; 4(9):1167-79. PMID: 20428223.
      Citations: 93     Fields:    Translation:CellsPHPublic Health
    54. He Z, Xu M, Deng Y, Kang S, Kellogg L, Wu L, Van Nostrand JD, Hobbie SE, Reich PB, Zhou J. Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2. Ecol Lett. 2010 May; 13(5):564-75. PMID: 20337697.
      Citations: 77     Fields:    Translation:PHPublic Health
    55. Xu M, Wu WM, Wu L, He Z, Van Nostrand JD, Deng Y, Luo J, Carley J, Ginder-Vogel M, Gentry TJ, Gu B, Watson D, Jardine PM, Marsh TL, Tiedje JM, Hazen T, Criddle CS, Zhou J. Responses of microbial community functional structures to pilot-scale uranium in situ bioremediation. ISME J. 2010 Aug; 4(8):1060-70. PMID: 20237512.
      Citations: 33     Fields:    Translation:CellsPHPublic Health
    56. Hemme CL, Deng Y, Gentry TJ, Fields MW, Wu L, Barua S, Barry K, Tringe SG, Watson DB, He Z, Hazen TC, Tiedje JM, Rubin EM, Zhou J. Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community. ISME J. 2010 May; 4(5):660-72. PMID: 20182523.
      Citations: 89     Fields:    Translation:HumansCells
    57. He Z, Zhou A, Baidoo E, He Q, Joachimiak MP, Benke P, Phan R, Mukhopadhyay A, Hemme CL, Huang K, Alm EJ, Fields MW, Wall J, Stahl D, Hazen TC, Keasling JD, Arkin AP, Zhou J. Global transcriptional, physiological, and metabolite analyses of the responses of Desulfovibrio vulgaris hildenborough to salt adaptation. Appl Environ Microbiol. 2010 Mar; 76(5):1574-86. PMID: 20038696.
      Citations: 24     Fields:    Translation:Cells
    58. Liang Y, He Z, Wu L, Deng Y, Li G, Zhou J. Development of a common oligonucleotide reference standard for microarray data normalization and comparison across different microbial communities. Appl Environ Microbiol. 2010 Feb; 76(4):1088-94. PMID: 20038701.
      Citations: 23     Fields:    Translation:CellsPHPublic Health
    59. Van Nostrand JD, Wu WM, Wu L, Deng Y, Carley J, Carroll S, He Z, Gu B, Luo J, Criddle CS, Watson DB, Jardine PM, Marsh TL, Tiedje JM, Hazen TC, Zhou J. GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer. Environ Microbiol. 2009 Oct; 11(10):2611-26. PMID: 19624708.
      Citations: 29     Fields:    Translation:CellsPHPublic Health
    60. Waldron PJ, Wu L, Van Nostrand JD, Schadt CW, He Z, Watson DB, Jardine PM, Palumbo AV, Hazen TC, Zhou J. Functional gene array-based analysis of microbial community structure in groundwaters with a gradient of contaminant levels. Environ Sci Technol. 2009 May 15; 43(10):3529-34. PMID: 19544850.
      Citations: 22     Fields:    Translation:CellsPHPublic Health
    61. Deng Y, He Z, Van Nostrand JD, Zhou J. Design and analysis of mismatch probes for long oligonucleotide microarrays. BMC Genomics. 2008 Oct 17; 9:491. PMID: 18928550.
      Citations: 8     Fields:    
    62. He Z, Zhou J. Empirical evaluation of a new method for calculating signal-to-noise ratio for microarray data analysis. Appl Environ Microbiol. 2008 May; 74(10):2957-66. PMID: 18344333.
      Citations: 28     Fields:    Translation:Cells
    63. He Z, Gentry TJ, Schadt CW, Wu L, Liebich J, Chong SC, Huang Z, Wu W, Gu B, Jardine P, Criddle C, Zhou J. GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes. ISME J. 2007 May; 1(1):67-77. PMID: 18043615.
      Citations: 128     Fields:    Translation:CellsPHPublic Health
    64. Wang Z, He Z, Chen JD. Filter banks and neural network-based feature extraction and automatic classification of electrogastrogram. Ann Biomed Eng. 1999 Jan-Feb; 27(1):88-95. PMID: 9916764.
      Citations:    Fields:    Translation:Humans
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