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Susan J Schroeder

TitleAssociate Professor
InstitutionUniversity of Oklahoma, Norman
DepartmentChemistry/Biochemistry
Addressn/a
620 Parrington Oval
Norman OK 73019
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    F32GM067354     (SCHROEDER, SUSAN J)Apr 1, 2003 - Mar 31, 2006
    NIH
    Crystallographic Studies of Ribosome Functional Sites
    Role: Principal Investigator

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    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Wang D, Booth JL, Wu W, Kiger N, Lettow M, Bates A, Pan C, Metcalf J, Schroeder SJ. Nanopore Direct RNA Sequencing Reveals Virus-Induced Changes in the Transcriptional Landscape in Human Bronchial Epithelial Cells. bioRxiv. 2024 Jun 28. PMID: 38979243; PMCID: PMC11230378.
      Citations:    
    2. Schroeder SJ. Insights into Nucleic Acid Helix Formation from Infrared Spectroscopy. Biophys J. 2023 Dec 20. PMID: 38130057.
      Citations:    Fields:    Translation:Cells
    3. Zuber J, Schroeder SJ, Sun H, Turner DH, Mathews DH. Nearest neighbor rules for RNA helix folding thermodynamics: improved end effects. Nucleic Acids Res. 2022 05 20; 50(9):5251-5262. PMID: 35524574.
      Citations: 5     Fields:    Translation:Cells
    4. Schlick T, Sundberg EJ, Schroeder SJ, Babu MM. Biophysicists' continued outstanding response to COVID-19. Biophys J. 2021 07 20; 120(14):E1. PMID: 34265250.
      Citations: 1     Fields:    Translation:HumansCells
    5. Schlick T, Sundberg EJ, Schroeder SJ, Babu MM. Biophysicists' outstanding response to Covid-19. Biophys J. 2021 03 16; 120(6):E1-E2. PMID: 33689685.
      Citations:    Fields:    Translation:HumansCells
    6. Schroeder SJ. Perspectives on Viral RNA Genomes and the RNA Folding Problem. Viruses. 2020 10 05; 12(10). PMID: 33027988.
      Citations: 9     Fields:    Translation:Cells
    7. Schroeder SJ. Challenges and approaches to predicting RNA with multiple functional structures. RNA. 2018 12; 24(12):1615-1624. PMID: 30143552.
      Citations: 15     Fields:    Translation:Cells
    8. Berger KD, Kennedy SD, Schroeder SJ, Znosko BM, Sun H, Mathews DH, Turner DH. Surprising Sequence Effects on GU Closure of Symmetric 2 × 2 Nucleotide RNA Internal Loops. Biochemistry. 2018 04 10; 57(14):2121-2131. PMID: 29570276.
      Citations: 3     Fields:    Translation:Cells
    9. Sloat N, Liu JW, Schroeder SJ. Swellix: a computational tool to explore RNA conformational space. BMC Bioinformatics. 2017 Nov 21; 18(1):504. PMID: 29157200.
      Citations: 3     Fields:    Translation:HumansCells
    10. Schroeder SJ. Stack Locally and Act Globally: A Few Nucleotides Make All the Difference in Enterovirus 71 IRES Binding hnRNAP A1 and Infectious Phenotypes: Commentary on "HnRNP A1 Alters the Structure of a Conserved Enterovirus IRES Domain to Stimulate Viral Translation". J Mol Biol. 2017 09 15; 429(19):2859-2862. PMID: 28802871.
      Citations:    Fields:    Translation:Cells
    11. Phan A, Mailey K, Saeki J, Gu X, Schroeder SJ. Advancing viral RNA structure prediction: measuring the thermodynamics of pyrimidine-rich internal loops. RNA. 2017 05; 23(5):770-781. PMID: 28213527.
      Citations: 7     Fields:    Translation:Cells
    12. Hill AC, Schroeder SJ. Thermodynamic stabilities of three-way junction nanomotifs in prohead RNA. RNA. 2017 04; 23(4):521-529. PMID: 28069889.
      Citations: 8     Fields:    Translation:Cells
    13. Gu X, Park SY, Tonelli M, Cornilescu G, Xia T, Zhong D, Schroeder SJ. NMR Structures and Dynamics in a Prohead RNA Loop that Binds Metal Ions. J Phys Chem Lett. 2016 Oct 06; 7(19):3841-3846. PMID: 27631837.
      Citations: 2     Fields:    Translation:Cells
    14. Hill AC, Bartley LE, Schroeder SJ. Prohead RNA: a noncoding viral RNA of novel structure and function. Wiley Interdiscip Rev RNA. 2016 07; 7(4):428-37. PMID: 26810250.
      Citations: 12     Fields:    Translation:Cells
    15. Guerra I, Schroeder SJ. Crumple: An Efficient Tool to Explore Thoroughly the RNA Folding Landscape. Methods Mol Biol. 2016; 1490:1-14. PMID: 27665589.
      Citations: 1     Fields:    Translation:Cells
    16. Gu X, Mooers BH, Thomas LM, Malone J, Harris S, Schroeder SJ. Structures and Energetics of Four Adjacent G·U Pairs That Stabilize an RNA Helix. J Phys Chem B. 2015 Oct 22; 119(42):13252-61. PMID: 26425937.
      Citations: 6     Fields:    Translation:Cells
    17. Stone JW, Bleckley S, Lavelle S, Schroeder SJ. A parallel implementation of the Wuchty algorithm with additional experimental filters to more thoroughly explore RNA conformational space. PLoS One. 2015; 10(2):e0117217. PMID: 25695434.
      Citations: 3     Fields:    Translation:Cells
    18. Schroeder SJ. Probing viral genomic structure: alternative viewpoints and alternative structures for satellite tobacco mosaic virus RNA. Biochemistry. 2014 Nov 04; 53(43):6728-37. PMID: 25320869.
      Citations: 9     Fields:    Translation:Cells
    19. Gu X, Nguyen MT, Overacre A, Seaton S, Schroeder SJ. Effects of salt, polyethylene glycol, and locked nucleic acids on the thermodynamic stabilities of consecutive terminal adenosine mismatches in RNA duplexes. J Phys Chem B. 2013 Apr 04; 117(13):3531-40. PMID: 23480443.
      Citations: 8     Fields:    
    20. Bleckley S, Stone JW, Schroeder SJ. Crumple: a method for complete enumeration of all possible pseudoknot-free RNA secondary structures. PLoS One. 2012; 7(12):e52414. PMID: 23300665.
      Citations: 5     Fields:    Translation:AnimalsCells
    21. Bleckley S, Schroeder SJ. Incorporating global features of RNA motifs in predictions for an ensemble of secondary structures for encapsidated MS2 bacteriophage RNA. RNA. 2012 Jul; 18(7):1309-18. PMID: 22645379.
      Citations: 12     Fields:    Translation:Cells
    22. Wang Y, Shen JK, Schroeder SJ. Nucleotide Dynamics at the A-Site Cleft in the Peptidyltransferase Center of H. marismortui 50S Ribosomal Subunits. J Phys Chem Lett. 2012 Apr 19; 3(8):1007-10. PMID: 26286564.
      Citations: 3     Fields:    
    23. Schroeder SJ, Stone JW, Bleckley S, Gibbons T, Mathews DM. Ensemble of secondary structures for encapsidated satellite tobacco mosaic virus RNA consistent with chemical probing and crystallography constraints. Biophys J. 2011 Jul 06; 101(1):167-75. PMID: 21723827.
      Citations: 27     Fields:    Translation:Cells
    24. Gu X, Schroeder SJ. Different sequences show similar quaternary interaction stabilities in prohead viral RNA self-assembly. J Biol Chem. 2011 Apr 22; 286(16):14419-26. PMID: 21349846.
      Citations: 11     Fields:    Translation:Cells
    25. Nguyen MT, Schroeder SJ. Consecutive terminal GU pairs stabilize RNA helices. Biochemistry. 2010 Dec 14; 49(49):10574-81. PMID: 21067139.
      Citations: 10     Fields:    Translation:Cells
    26. Harris S, Schroeder SJ. Nuclear magnetic resonance structure of the prohead RNA E-loop hairpin. Biochemistry. 2010 Jul 27; 49(29):5989-97. PMID: 20550192.
      Citations: 10     Fields:    Translation:Cells
    27. Schroeder SJ, Turner DH. Optical melting measurements of nucleic acid thermodynamics. Methods Enzymol. 2009; 468:371-87. PMID: 20946778.
      Citations: 49     Fields:    Translation:Cells
    28. Schroeder SJ. Advances in RNA structure prediction from sequence: new tools for generating hypotheses about viral RNA structure-function relationships. J Virol. 2009 Jul; 83(13):6326-34. PMID: 19369331.
      Citations: 26     Fields:    Translation:Cells
    29. Clanton-Arrowood K, McGurk J, Schroeder SJ. 3' terminal nucleotides determine thermodynamic stabilities of mismatches at the ends of RNA helices. Biochemistry. 2008 Dec 16; 47(50):13418-27. PMID: 19053257.
      Citations: 16     Fields:    Translation:Cells
    30. Blaha G, Gürel G, Schroeder SJ, Moore PB, Steitz TA. Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. J Mol Biol. 2008 Jun 06; 379(3):505-19. PMID: 18455733.
      Citations: 40     Fields:    Translation:Cells
    31. Schroeder SJ, Blaha G, Moore PB. Negamycin binds to the wall of the nascent chain exit tunnel of the 50S ribosomal subunit. Antimicrob Agents Chemother. 2007 Dec; 51(12):4462-5. PMID: 17664317.
      Citations: 16     Fields:    Translation:Cells
    32. Schroeder SJ, Blaha G, Tirado-Rives J, Steitz TA, Moore PB. The structures of antibiotics bound to the E site region of the 50 S ribosomal subunit of Haloarcula marismortui: 13-deoxytedanolide and girodazole. J Mol Biol. 2007 Apr 13; 367(5):1471-9. PMID: 17321546.
      Citations: 17     Fields:    Translation:Cells
    33. Tolbert BS, Kennedy SD, Schroeder SJ, Krugh TR, Turner DH. NMR structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2: probing the structural features that shape the thermodynamic stability of GA pairs. Biochemistry. 2007 Feb 13; 46(6):1511-22. PMID: 17279616.
      Citations: 20     Fields:    Translation:Cells
    34. Mathews DH, Disney MD, Childs JL, Schroeder SJ, Zuker M, Turner DH. Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc Natl Acad Sci U S A. 2004 May 11; 101(19):7287-92. PMID: 15123812.
      Citations: 698     Fields:    Translation:AnimalsCells
    35. Schroeder SJ, Fountain MA, Kennedy SD, Lukavsky PJ, Puglisi JD, Krugh TR, Turner DH. Thermodynamic stability and structural features of the J4/5 loop in a Pneumocystis carinii group I intron. Biochemistry. 2003 Dec 09; 42(48):14184-96. PMID: 14640686.
      Citations: 9     Fields:    Translation:AnimalsCells
    36. Znosko BM, Burkard ME, Schroeder SJ, Krugh TR, Turner DH. Sheared Aanti.Aanti base pairs in a destabilizing 2 x 2 internal loop: the NMR structure of 5'(rGGCAAGCCU)2. Biochemistry. 2002 Dec 17; 41(50):14969-77. PMID: 12475246.
      Citations: 7     Fields:    Translation:AnimalsCells
    37. Schroeder SJ, Turner DH. Thermodynamic stabilities of internal loops with GU closing pairs in RNA. Biochemistry. 2001 Sep 25; 40(38):11509-17. PMID: 11560499.
      Citations: 26     Fields:    Translation:Cells
    38. Schroeder SJ, Turner DH. Factors affecting the thermodynamic stability of small asymmetric internal loops in RNA. Biochemistry. 2000 Aug 08; 39(31):9257-74. PMID: 10924119.
      Citations: 36     Fields:    Translation:Cells
    39. Schroeder SJ, Burkard ME, Turner DH. The energetics of small internal loops in RNA. Biopolymers. 1999-2000; 52(4):157-67. PMID: 11295748.
      Citations: 17     Fields:    Translation:HumansCells
    40. Xia T, SantaLucia J, Burkard ME, Kierzek R, Schroeder SJ, Jiao X, Cox C, Turner DH. Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry. 1998 Oct 20; 37(42):14719-35. PMID: 9778347.
      Citations: 487     Fields:    Translation:Cells
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