Susan Schroeder to Nucleic Acid Conformation
This is a "connection" page, showing publications Susan Schroeder has written about Nucleic Acid Conformation.
Connection Strength
5.054
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Swellix: a computational tool to explore RNA conformational space. BMC Bioinformatics. 2017 Nov 21; 18(1):504.
Score: 0.554
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Structures and Energetics of Four Adjacent G·U Pairs That Stabilize an RNA Helix. J Phys Chem B. 2015 Oct 22; 119(42):13252-61.
Score: 0.478
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Crumple: a method for complete enumeration of all possible pseudoknot-free RNA secondary structures. PLoS One. 2012; 7(12):e52414.
Score: 0.394
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Incorporating global features of RNA motifs in predictions for an ensemble of secondary structures for encapsidated MS2 bacteriophage RNA. RNA. 2012 Jul; 18(7):1309-18.
Score: 0.379
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Ensemble of secondary structures for encapsidated satellite tobacco mosaic virus RNA consistent with chemical probing and crystallography constraints. Biophys J. 2011 Jul 06; 101(1):167-75.
Score: 0.356
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Consecutive terminal GU pairs stabilize RNA helices. Biochemistry. 2010 Dec 14; 49(49):10574-81.
Score: 0.341
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Advances in RNA structure prediction from sequence: new tools for generating hypotheses about viral RNA structure-function relationships. J Virol. 2009 Jul; 83(13):6326-34.
Score: 0.305
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3' terminal nucleotides determine thermodynamic stabilities of mismatches at the ends of RNA helices. Biochemistry. 2008 Dec 16; 47(50):13418-27.
Score: 0.298
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Thermodynamic stability and structural features of the J4/5 loop in a Pneumocystis carinii group I intron. Biochemistry. 2003 Dec 09; 42(48):14184-96.
Score: 0.211
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Thermodynamic stabilities of internal loops with GU closing pairs in RNA. Biochemistry. 2001 Sep 25; 40(38):11509-17.
Score: 0.181
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Perspectives on Viral RNA Genomes and the RNA Folding Problem. Viruses. 2020 10 05; 12(10).
Score: 0.169
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Factors affecting the thermodynamic stability of small asymmetric internal loops in RNA. Biochemistry. 2000 Aug 08; 39(31):9257-74.
Score: 0.167
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The energetics of small internal loops in RNA. Biopolymers. 1999-2000; 52(4):157-67.
Score: 0.150
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Challenges and approaches to predicting RNA with multiple functional structures. RNA. 2018 12; 24(12):1615-1624.
Score: 0.146
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Advancing viral RNA structure prediction: measuring the thermodynamics of pyrimidine-rich internal loops. RNA. 2017 05; 23(5):770-781.
Score: 0.131
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Thermodynamic stabilities of three-way junction nanomotifs in prohead RNA. RNA. 2017 04; 23(4):521-529.
Score: 0.130
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NMR Structures and Dynamics in a Prohead RNA Loop that Binds Metal Ions. J Phys Chem Lett. 2016 Oct 06; 7(19):3841-3846.
Score: 0.128
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Probing viral genomic structure: alternative viewpoints and alternative structures for satellite tobacco mosaic virus RNA. Biochemistry. 2014 Nov 04; 53(43):6728-37.
Score: 0.112
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Different sequences show similar quaternary interaction stabilities in prohead viral RNA self-assembly. J Biol Chem. 2011 Apr 22; 286(16):14419-26.
Score: 0.087
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Nuclear magnetic resonance structure of the prohead RNA E-loop hairpin. Biochemistry. 2010 Jul 27; 49(29):5989-97.
Score: 0.083
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Optical melting measurements of nucleic acid thermodynamics. Methods Enzymol. 2009; 468:371-87.
Score: 0.079
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Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc Natl Acad Sci U S A. 2004 May 11; 101(19):7287-92.
Score: 0.054
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Sheared Aanti.Aanti base pairs in a destabilizing 2 x 2 internal loop: the NMR structure of 5'(rGGCAAGCCU)2. Biochemistry. 2002 Dec 17; 41(50):14969-77.
Score: 0.049
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Nearest neighbor rules for RNA helix folding thermodynamics: improved end effects. Nucleic Acids Res. 2022 05 20; 50(9):5251-5262.
Score: 0.047
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NMR structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2: probing the structural features that shape the thermodynamic stability of GA pairs. Biochemistry. 2007 Feb 13; 46(6):1511-22.
Score: 0.016
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Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry. 1998 Oct 20; 37(42):14719-35.
Score: 0.009