Susan Schroeder to Base Pairing
This is a "connection" page, showing publications Susan Schroeder has written about Base Pairing.
Connection Strength
1.534
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Consecutive terminal GU pairs stabilize RNA helices. Biochemistry. 2010 Dec 14; 49(49):10574-81.
Score: 0.351
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3' terminal nucleotides determine thermodynamic stabilities of mismatches at the ends of RNA helices. Biochemistry. 2008 Dec 16; 47(50):13418-27.
Score: 0.307
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The energetics of small internal loops in RNA. Biopolymers. 1999-2000; 52(4):157-67.
Score: 0.154
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Swellix: a computational tool to explore RNA conformational space. BMC Bioinformatics. 2017 Nov 21; 18(1):504.
Score: 0.143
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Advancing viral RNA structure prediction: measuring the thermodynamics of pyrimidine-rich internal loops. RNA. 2017 05; 23(5):770-781.
Score: 0.135
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Structures and Energetics of Four Adjacent G·U Pairs That Stabilize an RNA Helix. J Phys Chem B. 2015 Oct 22; 119(42):13252-61.
Score: 0.123
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Crumple: a method for complete enumeration of all possible pseudoknot-free RNA secondary structures. PLoS One. 2012; 7(12):e52414.
Score: 0.101
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Ensemble of secondary structures for encapsidated satellite tobacco mosaic virus RNA consistent with chemical probing and crystallography constraints. Biophys J. 2011 Jul 06; 101(1):167-75.
Score: 0.092
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Thermodynamic stabilities of internal loops with GU closing pairs in RNA. Biochemistry. 2001 Sep 25; 40(38):11509-17.
Score: 0.047
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Factors affecting the thermodynamic stability of small asymmetric internal loops in RNA. Biochemistry. 2000 Aug 08; 39(31):9257-74.
Score: 0.043
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NMR structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2: probing the structural features that shape the thermodynamic stability of GA pairs. Biochemistry. 2007 Feb 13; 46(6):1511-22.
Score: 0.017
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Sheared Aanti.Aanti base pairs in a destabilizing 2 x 2 internal loop: the NMR structure of 5'(rGGCAAGCCU)2. Biochemistry. 2002 Dec 17; 41(50):14969-77.
Score: 0.013
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Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry. 1998 Oct 20; 37(42):14719-35.
Score: 0.009