Susan Schroeder to Base Sequence
This is a "connection" page, showing publications Susan Schroeder has written about Base Sequence.
Connection Strength
0.958
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Perspectives on Viral RNA Genomes and the RNA Folding Problem. Viruses. 2020 10 05; 12(10).
Score: 0.159
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Swellix: a computational tool to explore RNA conformational space. BMC Bioinformatics. 2017 Nov 21; 18(1):504.
Score: 0.130
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Crumple: a method for complete enumeration of all possible pseudoknot-free RNA secondary structures. PLoS One. 2012; 7(12):e52414.
Score: 0.093
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Incorporating global features of RNA motifs in predictions for an ensemble of secondary structures for encapsidated MS2 bacteriophage RNA. RNA. 2012 Jul; 18(7):1309-18.
Score: 0.089
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Ensemble of secondary structures for encapsidated satellite tobacco mosaic virus RNA consistent with chemical probing and crystallography constraints. Biophys J. 2011 Jul 06; 101(1):167-75.
Score: 0.084
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Different sequences show similar quaternary interaction stabilities in prohead viral RNA self-assembly. J Biol Chem. 2011 Apr 22; 286(16):14419-26.
Score: 0.081
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Nuclear magnetic resonance structure of the prohead RNA E-loop hairpin. Biochemistry. 2010 Jul 27; 49(29):5989-97.
Score: 0.078
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Advances in RNA structure prediction from sequence: new tools for generating hypotheses about viral RNA structure-function relationships. J Virol. 2009 Jul; 83(13):6326-34.
Score: 0.072
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Thermodynamic stability and structural features of the J4/5 loop in a Pneumocystis carinii group I intron. Biochemistry. 2003 Dec 09; 42(48):14184-96.
Score: 0.049
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Nearest neighbor rules for RNA helix folding thermodynamics: improved end effects. Nucleic Acids Res. 2022 05 20; 50(9):5251-5262.
Score: 0.044
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Thermodynamic stabilities of internal loops with GU closing pairs in RNA. Biochemistry. 2001 Sep 25; 40(38):11509-17.
Score: 0.042
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NMR structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2: probing the structural features that shape the thermodynamic stability of GA pairs. Biochemistry. 2007 Feb 13; 46(6):1511-22.
Score: 0.015
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Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc Natl Acad Sci U S A. 2004 May 11; 101(19):7287-92.
Score: 0.013
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Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry. 1998 Oct 20; 37(42):14719-35.
Score: 0.009