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Connection

Susan Schroeder to Base Sequence

This is a "connection" page, showing publications Susan Schroeder has written about Base Sequence.
Connection Strength

0.958
  1. Perspectives on Viral RNA Genomes and the RNA Folding Problem. Viruses. 2020 10 05; 12(10).
    View in: PubMed
    Score: 0.159
  2. Swellix: a computational tool to explore RNA conformational space. BMC Bioinformatics. 2017 Nov 21; 18(1):504.
    View in: PubMed
    Score: 0.130
  3. Crumple: a method for complete enumeration of all possible pseudoknot-free RNA secondary structures. PLoS One. 2012; 7(12):e52414.
    View in: PubMed
    Score: 0.093
  4. Incorporating global features of RNA motifs in predictions for an ensemble of secondary structures for encapsidated MS2 bacteriophage RNA. RNA. 2012 Jul; 18(7):1309-18.
    View in: PubMed
    Score: 0.089
  5. Ensemble of secondary structures for encapsidated satellite tobacco mosaic virus RNA consistent with chemical probing and crystallography constraints. Biophys J. 2011 Jul 06; 101(1):167-75.
    View in: PubMed
    Score: 0.084
  6. Different sequences show similar quaternary interaction stabilities in prohead viral RNA self-assembly. J Biol Chem. 2011 Apr 22; 286(16):14419-26.
    View in: PubMed
    Score: 0.081
  7. Nuclear magnetic resonance structure of the prohead RNA E-loop hairpin. Biochemistry. 2010 Jul 27; 49(29):5989-97.
    View in: PubMed
    Score: 0.078
  8. Advances in RNA structure prediction from sequence: new tools for generating hypotheses about viral RNA structure-function relationships. J Virol. 2009 Jul; 83(13):6326-34.
    View in: PubMed
    Score: 0.072
  9. Thermodynamic stability and structural features of the J4/5 loop in a Pneumocystis carinii group I intron. Biochemistry. 2003 Dec 09; 42(48):14184-96.
    View in: PubMed
    Score: 0.049
  10. Nearest neighbor rules for RNA helix folding thermodynamics: improved end effects. Nucleic Acids Res. 2022 05 20; 50(9):5251-5262.
    View in: PubMed
    Score: 0.044
  11. Thermodynamic stabilities of internal loops with GU closing pairs in RNA. Biochemistry. 2001 Sep 25; 40(38):11509-17.
    View in: PubMed
    Score: 0.042
  12. NMR structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2: probing the structural features that shape the thermodynamic stability of GA pairs. Biochemistry. 2007 Feb 13; 46(6):1511-22.
    View in: PubMed
    Score: 0.015
  13. Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc Natl Acad Sci U S A. 2004 May 11; 101(19):7287-92.
    View in: PubMed
    Score: 0.013
  14. Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry. 1998 Oct 20; 37(42):14719-35.
    View in: PubMed
    Score: 0.009
Connection Strength

The connection strength for concepts is the sum of the scores for each matching publication.

Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.