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Cecil M Lewis

InstitutionUniversity of Oklahoma, Norman
455 W Lindsey
Norman OK 73019
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    R25CA274172     (LEWIS, CECIL M)Aug 12, 2022 - Jul 31, 2027
    Native American Youths Enjoy Science - YES Oklahoma
    Role: Principal Investigator

    RM1HG009042     (SPICER, PAUL G)May 16, 2016 - Jun 30, 2024
    Center on the Ethics of Indigenous Genomic Research
    Role: Co-Principal Investigator

    R01GM089886     (LEWIS, CECIL M)Jul 1, 2011 - Jun 30, 2021
    Microbial Ecologies of Indigenous Communities
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Bhatia RP, Kirit HA, Lewis CM, Sankaranarayanan K, Bollback JP. Evolutionary barriers to horizontal gene transfer in macrophage-associated Salmonella. Evol Lett. 2023 Aug; 7(4):227-239. PMID: 37475746; PMCID: PMC10355182.
    2. Honap TP, Monroe CR, Johnson SJ, Jacobson DK, Abin CA, Austin RM, Sandberg P, Levine M, Sankaranarayanan K, Lewis CM. Oral metagenomes from Native American Ancestors reveal distinct microbial lineages in the pre-contact era. Am J Biol Anthropol. 2023 Apr 01. PMID: 37002784.
      Citations: 2     Fields:    Translation:HumansCells
    3. Lewis CM, Akinyi MY, DeWitte SN, Stone AC. Ancient pathogens provide a window into health and well-being. Proc Natl Acad Sci U S A. 2023 01 24; 120(4):e2209476119. PMID: 36649410; PMCID: PMC9942913.
      Citations: 4     Fields:    Translation:Humans
    4. Haffner JJ, Katemauswa M, Kagone TS, Hossain E, Jacobson D, Flores K, Parab AR, Obregon-Tito AJ, Tito RY, Reyes LM, Troncoso-Corzo L, Guija-Poma E, Meda N, Carabin H, Honap TP, Sankaranarayanan K, Lewis CM, McCall LI. Untargeted Fecal Metabolomic Analyses across an Industrialization Gradient Reveal Shared Metabolites and Impact of Industrialization on Fecal Microbiome-Metabolome Interactions. mSystems. 2022 Nov 23; e0071022. PMID: 36416540.
      Citations: 1     Fields:    Translation:Humans
    5. Beans JA, Trinidad SB, Blacksher E, Hiratsuka VY, Spicer P, Woodahl EL, Boyer BB, Lewis CM, Gaffney PM, Garrison NA, Burke W. Communicating Precision Medicine Research: Multidisciplinary Teams and Diverse Communities. Public Health Genomics. 2022 Aug 23; 1-9. PMID: 35998578; PMCID: PMC9947193.
      Citations: 1     Fields:    
    6. Jacobson D, Moore K, Gunderson C, Rowland M, Austin R, Honap TP, Xu J, Warinner C, Sankaranarayanan K, Lewis CM. Shifts in gut and vaginal microbiomes are associated with cancer recurrence time in women with ovarian cancer. PeerJ. 2021; 9:e11574. PMID: 34178459.
      Citations: 10     Fields:    
    7. Fellows Yates JA, Velsko IM, Aron F, Posth C, Hofman CA, Austin RM, Parker CE, Mann AE, Nägele K, Arthur KW, Arthur JW, Bauer CC, Crevecoeur I, Cupillard C, Curtis MC, Dalén L, Díaz-Zorita Bonilla M, Díez Fernández-Lomana JC, Drucker DG, Escribano Escrivá E, Francken M, Gibbon VE, González Morales MR, Grande Mateu A, Harvati K, Henry AG, Humphrey L, Menéndez M, Mihailovic D, Peresani M, Rodríguez Moroder S, Roksandic M, Rougier H, Sázelová S, Stock JT, Straus LG, Svoboda J, Teßmann B, Walker MJ, Power RC, Lewis CM, Sankaranarayanan K, Guschanski K, Wrangham RW, Dewhirst FE, Salazar-García DC, Krause J, Herbig A, Warinner C. The evolution and changing ecology of the African hominid oral microbiome. Proc Natl Acad Sci U S A. 2021 05 18; 118(20). PMID: 33972424.
      Citations: 25     Fields:    Translation:HumansAnimalsCells
    8. Jacobson DK, Honap TP, Ozga AT, Meda N, Kagoné TS, Carabin H, Spicer P, Tito RY, Obregon-Tito AJ, Reyes LM, Troncoso-Corzo L, Guija-Poma E, Sankaranarayanan K, Lewis CM. Publisher Correction: Analysis of global human gut metagenomes shows that metabolic resilience potential for short-chain fatty acid production is strongly influenced by lifestyle. Sci Rep. 2021 May 06; 11(1):10114. PMID: 33958685.
      Citations:    Fields:    
    9. Rampelli S, Turroni S, Mallol C, Hernandez C, Galván B, Sistiaga A, Biagi E, Astolfi A, Brigidi P, Benazzi S, Lewis CM, Warinner C, Hofman CA, Schnorr SL, Candela M. Components of a Neanderthal gut microbiome recovered from fecal sediments from El Salt. Commun Biol. 2021 02 05; 4(1):169. PMID: 33547403.
      Citations: 8     Translation:HumansAnimals
    10. Jacobson DK, Honap TP, Ozga AT, Meda N, Kagoné TS, Carabin H, Spicer P, Tito RY, Obregon-Tito AJ, Reyes LM, Troncoso-Corzo L, Guija-Poma E, Sankaranarayanan K, Lewis CM. Analysis of global human gut metagenomes shows that metabolic resilience potential for short-chain fatty acid production is strongly influenced by lifestyle. Sci Rep. 2021 01 18; 11(1):1724. PMID: 33462272.
      Citations: 8     Fields:    Translation:HumansCells
    11. Stone AC, Lewis CM, Schuenemann VJ. Insights into health and disease from ancient biomolecules. Philos Trans R Soc Lond B Biol Sci. 2020 11 23; 375(1812):20190568. PMID: 33012226.
      Citations: 2     Fields:    Translation:HumansAnimals
    12. Jacobson DK, Honap TP, Monroe C, Lund J, Houk BA, Novotny AC, Robin C, Marini E, Lewis CM. Functional diversity of microbial ecologies estimated from ancient human coprolites and dental calculus. Philos Trans R Soc Lond B Biol Sci. 2020 11 23; 375(1812):20190586. PMID: 33012230.
      Citations: 6     Fields:    Translation:HumansCells
    13. Borry M, Cordova B, Perri A, Wibowo M, Prasad Honap T, Ko J, Yu J, Britton K, Girdland-Flink L, Power RC, Stuijts I, Salazar-García DC, Hofman C, Hagan R, Samdapawindé Kagoné T, Meda N, Carabin H, Jacobson D, Reinhard K, Lewis C, Kostic A, Jeong C, Herbig A, Hübner A, Warinner C. CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content. PeerJ. 2020; 8:e9001. PMID: 32337106.
      Citations: 14     Fields:    
    14. Honap TP, Sankaranarayanan K, Schnorr SL, Ozga AT, Warinner C, Lewis CM. Biogeographic study of human gut-associated crAssphage suggests impacts from industrialization and recent expansion. PLoS One. 2020; 15(1):e0226930. PMID: 31940321.
      Citations: 23     Fields:    Translation:HumansCells
    15. Hagan RW, Hofman CA, Hübner A, Reinhard K, Schnorr S, Lewis CM, Sankaranarayanan K, Warinner CG. Comparison of extraction methods for recovering ancient microbial DNA from paleofeces. Am J Phys Anthropol. 2020 02; 171(2):275-284. PMID: 31785113.
      Citations: 20     Fields:    Translation:Animals
    16. Lewis CM, McCall LI, Sharp RR, Spicer PG. Ethical priority of the most actionable system of biomolecules: the metabolome. Am J Phys Anthropol. 2020 02; 171(2):177-181. PMID: 31643083.
      Citations: 7     Fields:    Translation:Humans
    17. Schnorr SL, Hofman CA, Netshifhefhe SR, Duncan FD, Honap TP, Lesnik J, Lewis CM. Taxonomic features and comparisons of the gut microbiome from two edible fungus-farming termites (Macrotermes falciger; M. natalensis) harvested in the Vhembe district of Limpopo, South Africa. BMC Microbiol. 2019 07 17; 19(1):164. PMID: 31315576.
      Citations: 9     Fields:    Translation:AnimalsCells
    18. Patel NB, Obregón-Tito AJ, Tito RY, Trujillo-Villaroel O, Marin-Reyes L, Troncoso-Corzo L, Guija-Poma E, Lewis CM, Lawson PA. Citroniella saccharovorans gen. nov. sp. nov., a member of the family Peptoniphilaceae isolated from a human fecal sample from a coastal traditional community member. Int J Syst Evol Microbiol. 2019 Apr; 69(4):1142-1148. PMID: 30767850.
      Citations: 1     Fields:    Translation:HumansCells
    19. Ziesemer KA, Ramos-Madrigal J, Mann AE, Brandt BW, Sankaranarayanan K, Ozga AT, Hoogland M, Hofman CA, Salazar-García DC, Frohlich B, Milner GR, Stone AC, Aldenderfer M, Lewis CM, Hofman CL, Warinner C, Schroeder H. The efficacy of whole human genome capture on ancient dental calculus and dentin. Am J Phys Anthropol. 2019 03; 168(3):496-509. PMID: 30586168.
      Citations: 9     Fields:    Translation:Humans
    20. Mann AE, Sabin S, Ziesemer K, Vågene ÅJ, Schroeder H, Ozga AT, Sankaranarayanan K, Hofman CA, Fellows Yates JA, Salazar-García DC, Frohlich B, Aldenderfer M, Hoogland M, Read C, Milner GR, Stone AC, Lewis CM, Krause J, Hofman C, Bos KI, Warinner C. Differential preservation of endogenous human and microbial DNA in dental calculus and dentin. Sci Rep. 2018 06 29; 8(1):9822. PMID: 29959351.
      Citations: 43     Fields:    Translation:HumansCells
    21. Velsko IM, Overmyer KA, Speller C, Klaus L, Collins MJ, Loe L, Frantz LAF, Sankaranarayanan K, Lewis CM, Martinez JBR, Chaves E, Coon JJ, Larson G, Warinner C. The dental calculus metabolome in modern and historic samples. Metabolomics. 2017; 13(11):134. PMID: 29046620.
      Citations: 22     Fields:    
    22. Schnorr SL, Sankaranarayanan K, Lewis CM, Warinner C. Insights into human evolution from ancient and contemporary microbiome studies. Curr Opin Genet Dev. 2016 Dec; 41:14-26. PMID: 27507098.
      Citations: 16     Fields:    Translation:HumansAnimals
    23. Ozga AT, Sankaranarayanan K, Tito RY, Obregon-Tito AJ, Foster MW, Tallbull G, Spicer P, Warinner CG, Lewis CM. Oral microbiome diversity among Cheyenne and Arapaho individuals from Oklahoma. Am J Phys Anthropol. 2016 10; 161(2):321-7. PMID: 27357925.
      Citations: 17     Fields:    Translation:HumansCells
    24. Jeong C, Ozga AT, Witonsky DB, Malmström H, Edlund H, Hofman CA, Hagan RW, Jakobsson M, Lewis CM, Aldenderfer MS, Di Rienzo A, Warinner C. Long-term genetic stability and a high-altitude East Asian origin for the peoples of the high valleys of the Himalayan arc. Proc Natl Acad Sci U S A. 2016 07 05; 113(27):7485-90. PMID: 27325755.
      Citations: 59     Fields:    Translation:Humans
    25. Ziesemer KA, Mann AE, Sankaranarayanan K, Schroeder H, Ozga AT, Brandt BW, Zaura E, Waters-Rist A, Hoogland M, Salazar-García DC, Aldenderfer M, Speller C, Hendy J, Weston DA, MacDonald SJ, Thomas GH, Collins MJ, Lewis CM, Hofman C, Warinner C. Corrigendum: Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification. Sci Rep. 2016 06 02; 6:27163. PMID: 27254246.
      Citations:    Fields:    
    26. Ozga AT, Nieves-Colón MA, Honap TP, Sankaranarayanan K, Hofman CA, Milner GR, Lewis CM, Stone AC, Warinner C. Successful enrichment and recovery of whole mitochondrial genomes from ancient human dental calculus. Am J Phys Anthropol. 2016 06; 160(2):220-8. PMID: 26989998.
      Citations: 28     Fields:    Translation:Humans
    27. Patel NB, Tito RY, Obregón-Tito AJ, O'Neal L, Trujillo-Villaroel O, Marin-Reyes L, Troncoso-Corzo L, Guija-Poma E, Lewis CM, Lawson PA. Peptoniphilus catoniae sp. nov., isolated from a human faecal sample from a traditional Peruvian coastal community. Int J Syst Evol Microbiol. 2016 May; 66(5):2019-2024. PMID: 26907921.
      Citations: 4     Fields:    Translation:HumansCells
    28. Sankaranarayanan K, Ozga AT, Warinner C, Tito RY, Obregon-Tito AJ, Xu J, Gaffney PM, Jervis LL, Cox D, Stephens L, Foster M, Tallbull G, Spicer P, Lewis CM. Gut Microbiome Diversity among Cheyenne and Arapaho Individuals from Western Oklahoma. Curr Biol. 2015 Dec 21; 25(24):3161-9. PMID: 26671671.
      Citations: 36     Fields:    Translation:Humans
    29. Ziesemer KA, Mann AE, Sankaranarayanan K, Schroeder H, Ozga AT, Brandt BW, Zaura E, Waters-Rist A, Hoogland M, Salazar-García DC, Aldenderfer M, Speller C, Hendy J, Weston DA, MacDonald SJ, Thomas GH, Collins MJ, Lewis CM, Hofman C, Warinner C. Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification. Sci Rep. 2015 11 13; 5:16498. PMID: 26563586.
      Citations: 57     Fields:    Translation:HumansCells
    30. O'Neal L, Obregón-Tito AJ, Tito RY, Ozga AT, Polo SI, Lewis CM, Lawson PA. Clostridium amazonense sp. nov. an obliqately anaerobic bacterium isolated from a remote Amazonian community in Peru. Anaerobe. 2015 Oct; 35(Pt B):33-7. PMID: 26123611.
      Citations: 3     Fields:    Translation:HumansCells
    31. Ozga AT, Tito RY, Kemp BM, Matternes H, Obregon-Tito A, Neal L, Lewis CM. Origins of an Unmarked Georgia Cemetery Using Ancient DNA Analysis. Hum Biol. 2015 Apr; 87(2):109-21. PMID: 26829294.
      Citations:    Fields:    Translation:Humans
    32. Obregon-Tito AJ, Tito RY, Metcalf J, Sankaranarayanan K, Clemente JC, Ursell LK, Zech Xu Z, Van Treuren W, Knight R, Gaffney PM, Spicer P, Lawson P, Marin-Reyes L, Trujillo-Villarroel O, Foster M, Guija-Poma E, Troncoso-Corzo L, Warinner C, Ozga AT, Lewis CM. Subsistence strategies in traditional societies distinguish gut microbiomes. Nat Commun. 2015 Mar 25; 6:6505. PMID: 25807110.
      Citations: 222     Fields:    Translation:HumansCells
    33. Warinner C, Speller C, Collins MJ, Lewis CM. Ancient human microbiomes. J Hum Evol. 2015 Feb; 79:125-36. PMID: 25559298.
      Citations: 37     Fields:    Translation:Humans
    34. Patel NB, Tito RY, Obregón-Tito AJ, O'Neal L, Trujillo-Villaroel O, Marin-Reyes L, Troncoso-Corzo L, Guija-Poma E, Hamada M, Uchino Y, Lewis CM, Lawson PA. Ezakiella peruensis gen. nov., sp. nov. isolated from human fecal sample from a coastal traditional community in Peru. Anaerobe. 2015 Apr; 32:43-48. PMID: 25481562.
      Citations: 11     Fields:    Translation:HumansCellsPHPublic Health
    35. Warinner C, Rodrigues JF, Vyas R, Trachsel C, Shved N, Grossmann J, Radini A, Hancock Y, Tito RY, Fiddyment S, Speller C, Hendy J, Charlton S, Luder HU, Salazar-García DC, Eppler E, Seiler R, Hansen LH, Castruita JA, Barkow-Oesterreicher S, Teoh KY, Kelstrup CD, Olsen JV, Nanni P, Kawai T, Willerslev E, von Mering C, Lewis CM, Collins MJ, Gilbert MT, Rühli F, Cappellini E. Pathogens and host immunity in the ancient human oral cavity. Nat Genet. 2014 Apr; 46(4):336-44. PMID: 24562188.
      Citations: 199     Fields:    Translation:HumansCells
    36. Cabana GS, Lewis CM, Tito RY, Covey RA, Cáceres AM, Cruz AF, Durand D, Housman G, Hulsey BI, Iannacone GC, López PW, Martínez R, Medina Á, Dávila OO, Pinto KP, Santillán SI, Domínguez PR, Rubel M, Smith HF, Smith SE, Massa VR, Lizárraga B, Stone AC. Population genetic structure of traditional populations in the Peruvian Central Andes and implications for South American population history. Hum Biol. 2014; 86(3):147-65. PMID: 25836744.
      Citations: 10     Fields:    Translation:HumansCells
    37. Cleeland LM, Reichard MV, Tito RY, Reinhard KJ, Lewis CM. Clarifying Prehistoric Parasitism from a Complementary Morphological and Molecular Approach. J Archaeol Sci. 2013 Jul 01; 40(7):3060-3066. PMID: 23645967.
      Citations: 15     
    38. Tito RY, Knights D, Metcalf J, Obregon-Tito AJ, Cleeland L, Najar F, Roe B, Reinhard K, Sobolik K, Belknap S, Foster M, Spicer P, Knight R, Lewis CM. Insights from characterizing extinct human gut microbiomes. PLoS One. 2012; 7(12):e51146. PMID: 23251439.
      Citations: 76     Fields:    Translation:Humans
    39. Schlebusch CM, Lewis CM, Vahter M, Engström K, Tito RY, Obregón-Tito AJ, Huerta D, Polo SI, Medina ÁC, Brutsaert TD, Concha G, Jakobsson M, Broberg K. Possible positive selection for an arsenic-protective haplotype in humans. Environ Health Perspect. 2013 Jan; 121(1):53-8. PMID: 23070617.
      Citations: 11     Fields:    Translation:Humans
    40. Lewis CM, Obregón-Tito A, Tito RY, Foster MW, Spicer PG. The Human Microbiome Project: lessons from human genomics. Trends Microbiol. 2012 Jan; 20(1):1-4. PMID: 22112388.
      Citations: 19     Fields:    Translation:Humans
    41. Tito RY, Belknap SL, Sobolik KD, Ingraham RC, Cleeland LM, Lewis CM. Brief communication: DNA from early Holocene American dog. Am J Phys Anthropol. 2011 Aug; 145(4):653-7. PMID: 21541929.
      Citations: 3     Fields:    Translation:HumansAnimals
    42. Lewis CM. Hierarchical modeling of genome-wide Short Tandem Repeat (STR) markers infers native American prehistory. Am J Phys Anthropol. 2010 Feb; 141(2):281-9. PMID: 19672848.
      Citations: 5     Fields:    Translation:HumansCells
    43. Tito RY, Macmil S, Wiley G, Najar F, Cleeland L, Qu C, Wang P, Romagne F, Leonard S, Ruiz AJ, Reinhard K, Roe BA, Lewis CM. Phylotyping and functional analysis of two ancient human microbiomes. PLoS One. 2008; 3(11):e3703. PMID: 19002248.
      Citations: 36     Fields:    Translation:HumansCells
    44. Verrelli BC, Lewis CM, Stone AC, Perry GH. Different selective pressures shape the molecular evolution of color vision in chimpanzee and human populations. Mol Biol Evol. 2008 Dec; 25(12):2735-43. PMID: 18832077.
      Citations: 15     Fields:    Translation:HumansAnimalsCells
    45. Lewis CM, Long JC. Native South American genetic structure and prehistory inferred from hierarchical modeling of mtDNA. Mol Biol Evol. 2008 Mar; 25(3):478-86. PMID: 18222947.
      Citations: 5     Fields:    Translation:Humans
    46. Wang S, Lewis CM, Jakobsson M, Ramachandran S, Ray N, Bedoya G, Rojas W, Parra MV, Molina JA, Gallo C, Mazzotti G, Poletti G, Hill K, Hurtado AM, Labuda D, Klitz W, Barrantes R, Bortolini MC, Salzano FM, Petzl-Erler ML, Tsuneto LT, Llop E, Rothhammer F, Excoffier L, Feldman MW, Rosenberg NA, Ruiz-Linares A. Genetic variation and population structure in native Americans. PLoS Genet. 2007 Nov; 3(11):e185. PMID: 18039031.
      Citations: 197     Fields:    Translation:HumansCells
    47. Lewis CM, Lizárraga B, Tito RY, López PW, Iannacone GC, Medina A, Martínez R, Polo SI, De La Cruz AF, Cáceres AM, Stone AC. Mitochondrial DNA and the peopling of South America. Hum Biol. 2007 Apr; 79(2):159-78. PMID: 18027812.
      Citations: 14     Fields:    Translation:Humans
    48. Lewis CM, Tito RY, Lizárraga B, Stone AC. Land, language, and loci: mtDNA in Native Americans and the genetic history of Peru. Am J Phys Anthropol. 2005 Jul; 127(3):351-60. PMID: 15584069.
      Citations: 14     Fields:    Translation:HumansCells
    49. Monsalve MV, Stone AC, Lewis CM, Rempel A, Richards M, Straathof D, Devine DV. Brief communication: molecular analysis of the Kwäday Dän Ts'finchi ancient remains found in a glacier in Canada. Am J Phys Anthropol. 2002 Nov; 119(3):288-91. PMID: 12365041.
      Citations: 4     Fields:    Translation:HumansCells
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